Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1009

Experiment: LB_plus_SM_buffer with 6D2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1008 and GFF1009 are separated by 465 nucleotidesGFF1009 and GFF1010 are separated by 112 nucleotidesGFF1010 and GFF1011 are separated by 61 nucleotides GFF1008 - Carbon starvation protein A paralog, at 190,917 to 192,968 GFF1008 GFF1009 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 193,434 to 195,095 GFF1009 GFF1010 - FIG01048313: hypothetical protein, at 195,208 to 195,357 GFF1010 GFF1011 - Transcriptional regulatory protein levR, at 195,419 to 198,184 GFF1011 Position (kb) 193 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 192.437 kb on - strand, within GFF1008at 192.437 kb on - strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.555 kb on + strand, within GFF1008at 192.898 kb on + strandat 192.899 kb on - strandat 192.907 kb on + strandat 192.908 kb on - strandat 193.039 kb on - strandat 193.071 kb on - strandat 193.089 kb on + strandat 193.138 kb on - strandat 193.149 kb on + strandat 193.149 kb on + strandat 193.150 kb on - strandat 193.150 kb on - strandat 193.191 kb on - strandat 193.194 kb on + strandat 193.223 kb on - strandat 193.297 kb on + strandat 193.331 kb on + strandat 193.349 kb on - strandat 193.358 kb on - strandat 193.409 kb on + strandat 193.409 kb on + strandat 193.409 kb on + strandat 193.755 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.818 kb on + strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.819 kb on - strand, within GFF1009at 193.823 kb on + strand, within GFF1009at 193.823 kb on + strand, within GFF1009at 193.908 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.932 kb on + strand, within GFF1009at 193.933 kb on - strand, within GFF1009at 193.941 kb on + strand, within GFF1009at 193.942 kb on - strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.943 kb on + strand, within GFF1009at 193.965 kb on + strand, within GFF1009at 193.965 kb on + strand, within GFF1009at 193.998 kb on + strand, within GFF1009at 193.998 kb on + strand, within GFF1009at 194.584 kb on + strand, within GFF1009at 194.722 kb on + strand, within GFF1009at 194.723 kb on - strand, within GFF1009at 194.723 kb on - strand, within GFF1009at 195.121 kb on - strandat 195.210 kb on - strandat 195.246 kb on - strand, within GFF1010at 195.386 kb on + strandat 195.386 kb on + strandat 195.386 kb on + strandat 195.387 kb on - strandat 195.523 kb on + strandat 195.523 kb on + strandat 195.524 kb on - strandat 195.917 kb on - strand, within GFF1011at 195.917 kb on - strand, within GFF1011at 196.053 kb on + strand, within GFF1011at 196.053 kb on + strand, within GFF1011at 196.054 kb on - strand, within GFF1011

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6D2_phage 15 MOI
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192,437 - GFF1008 0.74 -0.1
192,437 - GFF1008 0.74 +0.4
192,555 + GFF1008 0.80 +1.4
192,555 + GFF1008 0.80 -0.1
192,555 + GFF1008 0.80 +0.3
192,898 + -0.5
192,899 - -0.5
192,907 + +0.3
192,908 - -0.8
193,039 - -0.2
193,071 - -0.5
193,089 + -0.8
193,138 - +0.0
193,149 + +2.1
193,149 + +0.3
193,150 - -0.6
193,150 - -0.7
193,191 - +0.8
193,194 + +1.1
193,223 - -0.5
193,297 + -0.9
193,331 + +0.3
193,349 - -0.7
193,358 - -0.6
193,409 + +0.0
193,409 + -0.5
193,409 + -0.1
193,755 + GFF1009 0.19 -0.3
193,818 + GFF1009 0.23 -1.2
193,818 + GFF1009 0.23 +1.1
193,818 + GFF1009 0.23 -1.6
193,818 + GFF1009 0.23 -0.1
193,819 - GFF1009 0.23 -0.2
193,819 - GFF1009 0.23 -0.8
193,819 - GFF1009 0.23 -0.2
193,823 + GFF1009 0.23 -1.9
193,823 + GFF1009 0.23 -0.1
193,908 + GFF1009 0.29 +0.2
193,932 + GFF1009 0.30 +0.2
193,932 + GFF1009 0.30 -0.3
193,932 + GFF1009 0.30 -0.7
193,932 + GFF1009 0.30 -0.2
193,933 - GFF1009 0.30 -0.1
193,941 + GFF1009 0.31 -1.3
193,942 - GFF1009 0.31 -0.7
193,943 + GFF1009 0.31 -0.5
193,943 + GFF1009 0.31 +0.2
193,943 + GFF1009 0.31 -0.5
193,965 + GFF1009 0.32 +0.8
193,965 + GFF1009 0.32 -0.4
193,998 + GFF1009 0.34 +0.1
193,998 + GFF1009 0.34 -0.6
194,584 + GFF1009 0.69 -0.1
194,722 + GFF1009 0.77 -0.0
194,723 - GFF1009 0.78 +0.5
194,723 - GFF1009 0.78 +1.0
195,121 - +0.4
195,210 - -0.6
195,246 - GFF1010 0.25 +1.0
195,386 + -0.5
195,386 + +0.3
195,386 + -0.6
195,387 - +0.4
195,523 + -0.2
195,523 + -0.4
195,524 - -0.2
195,917 - GFF1011 0.18 -0.1
195,917 - GFF1011 0.18 -0.7
196,053 + GFF1011 0.23 +0.1
196,053 + GFF1011 0.23 +0.4
196,054 - GFF1011 0.23 -0.9

Or see this region's nucleotide sequence