Strain Fitness in Agrobacterium fabrum C58 around Atu8061

Experiment: spermidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6003 and Atu8061 are separated by 262 nucleotidesAtu8061 and Atu6004 are separated by 178 nucleotides Atu6003: Atu6003 - C, at 6,139 to 6,870 Atu6003 Atu8061: Atu8061 - hypothetical protein, at 7,133 to 7,399 Atu8061 Atu6004: Atu6004 - D protein, at 7,578 to 8,273 Atu6004 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.136 kb on + strandat 6.136 kb on + strandat 6.137 kb on - strandat 6.148 kb on + strandat 6.154 kb on - strandat 6.157 kb on - strandat 6.157 kb on - strandat 6.192 kb on - strandat 6.192 kb on - strandat 6.233 kb on + strand, within Atu6003at 6.260 kb on - strand, within Atu6003at 6.263 kb on - strand, within Atu6003at 6.318 kb on + strand, within Atu6003at 6.326 kb on - strand, within Atu6003at 6.359 kb on + strand, within Atu6003at 6.363 kb on - strand, within Atu6003at 6.376 kb on + strand, within Atu6003at 6.384 kb on - strand, within Atu6003at 6.384 kb on - strand, within Atu6003at 6.384 kb on - strand, within Atu6003at 6.407 kb on - strand, within Atu6003at 6.457 kb on + strand, within Atu6003at 6.502 kb on + strand, within Atu6003at 6.548 kb on - strand, within Atu6003at 6.550 kb on - strand, within Atu6003at 6.575 kb on - strand, within Atu6003at 6.585 kb on + strand, within Atu6003at 6.588 kb on + strand, within Atu6003at 6.603 kb on - strand, within Atu6003at 6.608 kb on - strand, within Atu6003at 6.610 kb on - strand, within Atu6003at 6.628 kb on - strand, within Atu6003at 6.645 kb on - strand, within Atu6003at 6.725 kb on + strand, within Atu6003at 6.837 kb on - strandat 6.847 kb on + strandat 6.855 kb on - strandat 7.105 kb on + strandat 7.162 kb on - strand, within Atu8061at 7.210 kb on + strand, within Atu8061at 7.232 kb on + strand, within Atu8061at 7.286 kb on + strand, within Atu8061at 7.294 kb on - strand, within Atu8061at 7.323 kb on + strand, within Atu8061at 7.339 kb on + strand, within Atu8061at 7.380 kb on - strandat 7.529 kb on - strandat 7.552 kb on - strandat 7.554 kb on + strandat 7.554 kb on + strandat 7.562 kb on - strandat 7.562 kb on - strandat 7.562 kb on - strandat 7.564 kb on - strandat 7.610 kb on + strandat 7.634 kb on - strandat 7.643 kb on + strandat 7.648 kb on + strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.651 kb on - strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.658 kb on + strand, within Atu6004at 7.663 kb on + strand, within Atu6004at 7.668 kb on + strand, within Atu6004at 7.671 kb on - strand, within Atu6004at 7.676 kb on - strand, within Atu6004at 7.692 kb on + strand, within Atu6004at 7.692 kb on + strand, within Atu6004at 7.707 kb on - strand, within Atu6004at 7.724 kb on + strand, within Atu6004at 7.740 kb on + strand, within Atu6004at 7.757 kb on - strand, within Atu6004at 7.761 kb on + strand, within Atu6004at 7.762 kb on - strand, within Atu6004at 7.784 kb on + strand, within Atu6004at 7.792 kb on + strand, within Atu6004at 7.800 kb on + strand, within Atu6004at 7.800 kb on + strand, within Atu6004at 7.810 kb on + strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.818 kb on - strand, within Atu6004at 7.824 kb on - strand, within Atu6004at 7.824 kb on - strand, within Atu6004at 7.857 kb on - strand, within Atu6004at 7.946 kb on - strand, within Atu6004at 7.946 kb on - strand, within Atu6004at 7.958 kb on - strand, within Atu6004at 7.958 kb on - strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.968 kb on + strand, within Atu6004at 7.976 kb on - strand, within Atu6004at 7.985 kb on + strand, within Atu6004at 7.996 kb on + strand, within Atu6004at 8.018 kb on - strand, within Atu6004at 8.037 kb on + strand, within Atu6004at 8.061 kb on + strand, within Atu6004at 8.064 kb on - strand, within Atu6004at 8.095 kb on - strand, within Atu6004at 8.116 kb on + strand, within Atu6004at 8.124 kb on + strand, within Atu6004at 8.124 kb on - strand, within Atu6004at 8.144 kb on + strand, within Atu6004at 8.184 kb on + strand, within Atu6004at 8.184 kb on + strand, within Atu6004at 8.192 kb on - strand, within Atu6004at 8.266 kb on + strandat 8.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spermidine (N)
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6,136 + -0.1
6,136 + +0.9
6,137 - +1.4
6,148 + +1.0
6,154 - +0.8
6,157 - -0.1
6,157 - +0.5
6,192 - +0.5
6,192 - +2.2
6,233 + Atu6003 0.13 +0.0
6,260 - Atu6003 0.17 +0.9
6,263 - Atu6003 0.17 +0.9
6,318 + Atu6003 0.24 +1.1
6,326 - Atu6003 0.26 +0.5
6,359 + Atu6003 0.30 +0.2
6,363 - Atu6003 0.31 +1.0
6,376 + Atu6003 0.32 +0.0
6,384 - Atu6003 0.33 +2.3
6,384 - Atu6003 0.33 -0.8
6,384 - Atu6003 0.33 +2.2
6,407 - Atu6003 0.37 -0.3
6,457 + Atu6003 0.43 +1.3
6,502 + Atu6003 0.50 +0.6
6,548 - Atu6003 0.56 +1.2
6,550 - Atu6003 0.56 -1.1
6,575 - Atu6003 0.60 +1.0
6,585 + Atu6003 0.61 +3.6
6,588 + Atu6003 0.61 +0.4
6,603 - Atu6003 0.63 +0.4
6,608 - Atu6003 0.64 +0.4
6,610 - Atu6003 0.64 +0.5
6,628 - Atu6003 0.67 +0.2
6,645 - Atu6003 0.69 +2.7
6,725 + Atu6003 0.80 +3.1
6,837 - +0.2
6,847 + +0.3
6,855 - +2.7
7,105 + +1.3
7,162 - Atu8061 0.11 +0.6
7,210 + Atu8061 0.29 +0.3
7,232 + Atu8061 0.37 -2.0
7,286 + Atu8061 0.57 +1.2
7,294 - Atu8061 0.60 +0.7
7,323 + Atu8061 0.71 -0.0
7,339 + Atu8061 0.77 -0.1
7,380 - +0.3
7,529 - +0.3
7,552 - +2.0
7,554 + -0.8
7,554 + +0.3
7,562 - +1.4
7,562 - +0.2
7,562 - +1.5
7,564 - +0.2
7,610 + +0.6
7,634 - -0.6
7,643 + -0.6
7,648 + Atu6004 0.10 +1.7
7,651 - Atu6004 0.10 +0.1
7,651 - Atu6004 0.10 +1.0
7,651 - Atu6004 0.10 +0.9
7,658 + Atu6004 0.11 +2.3
7,658 + Atu6004 0.11 -1.7
7,658 + Atu6004 0.11 -1.1
7,663 + Atu6004 0.12 -0.1
7,668 + Atu6004 0.13 +0.2
7,671 - Atu6004 0.13 +2.3
7,676 - Atu6004 0.14 +0.3
7,692 + Atu6004 0.16 +2.2
7,692 + Atu6004 0.16 +2.3
7,707 - Atu6004 0.19 +2.0
7,724 + Atu6004 0.21 +1.3
7,740 + Atu6004 0.23 +1.2
7,757 - Atu6004 0.26 +0.6
7,761 + Atu6004 0.26 +1.9
7,762 - Atu6004 0.26 -0.2
7,784 + Atu6004 0.30 -0.8
7,792 + Atu6004 0.31 +1.4
7,800 + Atu6004 0.32 +0.4
7,800 + Atu6004 0.32 +1.6
7,810 + Atu6004 0.33 +1.4
7,818 - Atu6004 0.34 +0.5
7,818 - Atu6004 0.34 +0.3
7,818 - Atu6004 0.34 +0.0
7,818 - Atu6004 0.34 +2.7
7,818 - Atu6004 0.34 +0.7
7,824 - Atu6004 0.35 +0.9
7,824 - Atu6004 0.35 +0.9
7,857 - Atu6004 0.40 +1.7
7,946 - Atu6004 0.53 +0.2
7,946 - Atu6004 0.53 +1.2
7,958 - Atu6004 0.55 +1.5
7,958 - Atu6004 0.55 +3.7
7,968 + Atu6004 0.56 -0.2
7,968 + Atu6004 0.56 +0.2
7,968 + Atu6004 0.56 +0.8
7,976 - Atu6004 0.57 +0.2
7,985 + Atu6004 0.58 -1.6
7,996 + Atu6004 0.60 +1.7
8,018 - Atu6004 0.63 -0.2
8,037 + Atu6004 0.66 -0.3
8,061 + Atu6004 0.69 +2.4
8,064 - Atu6004 0.70 +0.6
8,095 - Atu6004 0.74 -0.4
8,116 + Atu6004 0.77 +0.3
8,124 + Atu6004 0.78 +0.5
8,124 - Atu6004 0.78 +2.0
8,144 + Atu6004 0.81 +0.7
8,184 + Atu6004 0.87 -1.3
8,184 + Atu6004 0.87 +0.4
8,192 - Atu6004 0.88 +2.7
8,266 + +1.8
8,399 + +0.1

Or see this region's nucleotide sequence