Experiment: spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5443 and Atu5444 are separated by 110 nucleotides Atu5444 and Atu5445 are separated by 57 nucleotides Atu5445 and Atu5446 are separated by 111 nucleotides
Atu5443: Atu5443 - TetR family transcriptional regulator, at 436,623 to 437,171
Atu5443
Atu5444: Atu5444 - short-chain dehydrogenase, at 437,282 to 438,070
Atu5444
Atu5445: Atu5445 - oxidoreductase, at 438,128 to 439,222
Atu5445
Atu5446: Atu5446 - cultivar specificity protein W78, at 439,334 to 440,236
Atu5446
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 437.300 kb on + strand at 437.300 kb on + strand at 437.364 kb on + strand, within Atu5444 at 437.384 kb on + strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.511 kb on + strand, within Atu5444 at 437.586 kb on + strand, within Atu5444 at 437.596 kb on + strand, within Atu5444 at 437.614 kb on + strand, within Atu5444 at 437.790 kb on + strand, within Atu5444 at 437.872 kb on + strand, within Atu5444 at 437.915 kb on + strand, within Atu5444 at 438.030 kb on + strand at 438.040 kb on + strand at 438.064 kb on + strand at 438.072 kb on - strand at 438.072 kb on - strand at 438.074 kb on + strand at 438.160 kb on - strand at 438.168 kb on - strand at 438.235 kb on - strand at 438.256 kb on + strand, within Atu5445 at 438.256 kb on + strand, within Atu5445 at 438.256 kb on + strand, within Atu5445 at 438.258 kb on + strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.266 kb on - strand, within Atu5445 at 438.266 kb on - strand, within Atu5445 at 438.289 kb on - strand, within Atu5445 at 438.293 kb on + strand, within Atu5445 at 438.320 kb on + strand, within Atu5445 at 438.375 kb on + strand, within Atu5445 at 438.375 kb on + strand, within Atu5445 at 438.383 kb on - strand, within Atu5445 at 438.466 kb on + strand, within Atu5445 at 438.474 kb on - strand, within Atu5445 at 438.666 kb on + strand, within Atu5445 at 438.672 kb on + strand, within Atu5445 at 438.694 kb on - strand, within Atu5445 at 438.704 kb on - strand, within Atu5445 at 438.803 kb on + strand, within Atu5445 at 438.811 kb on - strand, within Atu5445 at 438.811 kb on - strand, within Atu5445 at 438.819 kb on - strand, within Atu5445 at 438.843 kb on - strand, within Atu5445 at 438.848 kb on + strand, within Atu5445 at 438.863 kb on + strand, within Atu5445 at 438.871 kb on - strand, within Atu5445 at 438.895 kb on + strand, within Atu5445 at 438.913 kb on - strand, within Atu5445 at 438.927 kb on - strand, within Atu5445 at 438.958 kb on - strand, within Atu5445 at 439.004 kb on - strand, within Atu5445 at 439.059 kb on - strand, within Atu5445 at 439.120 kb on - strand at 439.122 kb on - strand at 439.133 kb on - strand at 439.149 kb on - strand at 439.172 kb on + strand at 439.226 kb on + strand at 439.240 kb on - strand at 439.257 kb on - strand at 439.257 kb on - strand at 439.257 kb on - strand at 439.355 kb on + strand at 439.483 kb on - strand, within Atu5446 at 439.494 kb on + strand, within Atu5446 at 439.498 kb on + strand, within Atu5446 at 439.507 kb on + strand, within Atu5446 at 439.523 kb on + strand, within Atu5446 at 439.533 kb on + strand, within Atu5446 at 439.536 kb on - strand, within Atu5446 at 439.590 kb on + strand, within Atu5446 at 439.594 kb on - strand, within Atu5446 at 439.596 kb on - strand, within Atu5446 at 439.735 kb on - strand, within Atu5446 at 439.749 kb on + strand, within Atu5446 at 439.781 kb on + strand, within Atu5446 at 439.805 kb on + strand, within Atu5446 at 439.806 kb on + strand, within Atu5446 at 439.806 kb on + strand, within Atu5446 at 439.814 kb on - strand, within Atu5446 at 439.816 kb on + strand, within Atu5446 at 439.816 kb on + strand, within Atu5446 at 439.816 kb on + strand, within Atu5446 at 439.927 kb on - strand, within Atu5446 at 439.927 kb on - strand, within Atu5446 at 439.946 kb on - strand, within Atu5446 at 439.989 kb on - strand, within Atu5446 at 440.033 kb on + strand, within Atu5446 at 440.033 kb on + strand, within Atu5446 at 440.041 kb on - strand, within Atu5446
Per-strain Table
Position Strand Gene LocusTag Fraction spermidine (N) remove 437,300 + +0.9 437,300 + -0.3 437,364 + Atu5444 0.10 +0.9 437,384 + Atu5444 0.13 -2.6 437,507 - Atu5444 0.29 -0.5 437,507 - Atu5444 0.29 +0.3 437,507 - Atu5444 0.29 -1.3 437,511 + Atu5444 0.29 -0.4 437,586 + Atu5444 0.39 +1.9 437,596 + Atu5444 0.40 +0.8 437,614 + Atu5444 0.42 +3.9 437,790 + Atu5444 0.64 +1.1 437,872 + Atu5444 0.75 -0.5 437,915 + Atu5444 0.80 -0.0 438,030 + -0.6 438,040 + -0.3 438,064 + +1.0 438,072 - +0.5 438,072 - +1.0 438,074 + +0.3 438,160 - -0.7 438,168 - +1.1 438,235 - +1.9 438,256 + Atu5445 0.12 +0.9 438,256 + Atu5445 0.12 +0.2 438,256 + Atu5445 0.12 -1.7 438,258 + Atu5445 0.12 +0.2 438,264 - Atu5445 0.12 -0.3 438,264 - Atu5445 0.12 +0.5 438,264 - Atu5445 0.12 -0.0 438,264 - Atu5445 0.12 +0.2 438,266 - Atu5445 0.13 +1.5 438,266 - Atu5445 0.13 +0.3 438,289 - Atu5445 0.15 -0.2 438,293 + Atu5445 0.15 +2.1 438,320 + Atu5445 0.18 -0.7 438,375 + Atu5445 0.23 -0.5 438,375 + Atu5445 0.23 +1.3 438,383 - Atu5445 0.23 +0.9 438,466 + Atu5445 0.31 +1.2 438,474 - Atu5445 0.32 +1.3 438,666 + Atu5445 0.49 -0.9 438,672 + Atu5445 0.50 -0.1 438,694 - Atu5445 0.52 -0.1 438,704 - Atu5445 0.53 +1.3 438,803 + Atu5445 0.62 -1.1 438,811 - Atu5445 0.62 +0.1 438,811 - Atu5445 0.62 -0.0 438,819 - Atu5445 0.63 -0.9 438,843 - Atu5445 0.65 +2.3 438,848 + Atu5445 0.66 -1.2 438,863 + Atu5445 0.67 +1.4 438,871 - Atu5445 0.68 -0.2 438,895 + Atu5445 0.70 +0.1 438,913 - Atu5445 0.72 -0.4 438,927 - Atu5445 0.73 -1.3 438,958 - Atu5445 0.76 +0.7 439,004 - Atu5445 0.80 -0.3 439,059 - Atu5445 0.85 +0.4 439,120 - +0.2 439,122 - +1.4 439,133 - +0.1 439,149 - -0.1 439,172 + -0.9 439,226 + +0.5 439,240 - -0.5 439,257 - +0.3 439,257 - +1.0 439,257 - +1.2 439,355 + +1.5 439,483 - Atu5446 0.17 -0.5 439,494 + Atu5446 0.18 -0.7 439,498 + Atu5446 0.18 +0.5 439,507 + Atu5446 0.19 -2.1 439,523 + Atu5446 0.21 +1.0 439,533 + Atu5446 0.22 +0.4 439,536 - Atu5446 0.22 -0.6 439,590 + Atu5446 0.28 +0.7 439,594 - Atu5446 0.29 +0.0 439,596 - Atu5446 0.29 +0.8 439,735 - Atu5446 0.44 -0.4 439,749 + Atu5446 0.46 -0.5 439,781 + Atu5446 0.50 -0.5 439,805 + Atu5446 0.52 -0.8 439,806 + Atu5446 0.52 -0.1 439,806 + Atu5446 0.52 +3.9 439,814 - Atu5446 0.53 +1.9 439,816 + Atu5446 0.53 +0.1 439,816 + Atu5446 0.53 -0.5 439,816 + Atu5446 0.53 +0.8 439,927 - Atu5446 0.66 +0.3 439,927 - Atu5446 0.66 -0.2 439,946 - Atu5446 0.68 +0.2 439,989 - Atu5446 0.73 -0.3 440,033 + Atu5446 0.77 +0.9 440,033 + Atu5446 0.77 -0.2 440,041 - Atu5446 0.78 -0.4
Or see this region's nucleotide sequence