Strain Fitness in Agrobacterium fabrum C58 around Atu5062

Experiment: spermidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5060 and Atu5061 are separated by 16 nucleotidesAtu5061 and Atu5062 overlap by 4 nucleotidesAtu5062 and Atu5063 are separated by 19 nucleotides Atu5060: Atu5060 - ABC transporter membrane spanning protein (glycerol-3-phosphate), at 59,128 to 59,937 Atu5060 Atu5061: Atu5061 - glycerophosphoryl diester phosphodiesterase, at 59,954 to 60,703 Atu5061 Atu5062: Atu5062 - ABC transporter nucleotide binding/ATPase (glycerol-3-phosphate), at 60,700 to 61,743 Atu5062 Atu5063: Atu5063 - RpiR family transcriptional regulator, at 61,763 to 62,641 Atu5063 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2 3at 59.760 kb on + strand, within Atu5060at 59.766 kb on - strand, within Atu5060at 59.818 kb on - strand, within Atu5060at 59.843 kb on - strand, within Atu5060at 59.879 kb on + strandat 59.883 kb on + strandat 59.912 kb on + strandat 59.914 kb on + strandat 59.974 kb on - strandat 60.132 kb on - strand, within Atu5061at 60.133 kb on - strand, within Atu5061at 60.133 kb on - strand, within Atu5061at 60.399 kb on - strand, within Atu5061at 60.427 kb on + strand, within Atu5061at 60.541 kb on - strand, within Atu5061at 60.560 kb on + strand, within Atu5061at 60.584 kb on + strand, within Atu5061at 60.592 kb on - strand, within Atu5061at 60.746 kb on + strandat 60.746 kb on + strandat 60.746 kb on + strandat 60.754 kb on - strandat 60.756 kb on + strandat 60.756 kb on + strandat 60.756 kb on + strandat 60.853 kb on + strand, within Atu5062at 60.854 kb on + strand, within Atu5062at 60.878 kb on - strand, within Atu5062at 60.889 kb on + strand, within Atu5062at 60.897 kb on - strand, within Atu5062at 60.960 kb on + strand, within Atu5062at 61.068 kb on + strand, within Atu5062at 61.104 kb on + strand, within Atu5062at 61.111 kb on + strand, within Atu5062at 61.116 kb on + strand, within Atu5062at 61.124 kb on - strand, within Atu5062at 61.156 kb on + strand, within Atu5062at 61.164 kb on - strand, within Atu5062at 61.164 kb on - strand, within Atu5062at 61.221 kb on - strand, within Atu5062at 61.226 kb on + strand, within Atu5062at 61.258 kb on + strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.266 kb on - strand, within Atu5062at 61.271 kb on - strand, within Atu5062at 61.304 kb on - strand, within Atu5062at 61.318 kb on + strand, within Atu5062at 61.441 kb on + strand, within Atu5062at 61.456 kb on + strand, within Atu5062at 61.459 kb on - strand, within Atu5062at 61.474 kb on - strand, within Atu5062at 61.485 kb on - strand, within Atu5062at 61.523 kb on + strand, within Atu5062at 61.523 kb on + strand, within Atu5062at 61.531 kb on - strand, within Atu5062at 61.565 kb on + strand, within Atu5062at 61.565 kb on + strand, within Atu5062at 61.573 kb on - strand, within Atu5062at 61.573 kb on - strand, within Atu5062at 61.573 kb on - strand, within Atu5062at 61.786 kb on + strandat 61.814 kb on - strandat 61.873 kb on - strand, within Atu5063at 61.873 kb on - strand, within Atu5063at 61.916 kb on + strand, within Atu5063at 61.916 kb on + strand, within Atu5063at 61.922 kb on + strand, within Atu5063at 61.930 kb on - strand, within Atu5063at 61.961 kb on - strand, within Atu5063at 61.999 kb on - strand, within Atu5063at 62.057 kb on - strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.101 kb on - strand, within Atu5063at 62.126 kb on + strand, within Atu5063at 62.126 kb on + strand, within Atu5063at 62.136 kb on + strand, within Atu5063at 62.172 kb on + strand, within Atu5063at 62.225 kb on + strand, within Atu5063at 62.391 kb on + strand, within Atu5063at 62.459 kb on + strand, within Atu5063at 62.493 kb on + strand, within Atu5063at 62.511 kb on + strand, within Atu5063at 62.546 kb on + strand, within Atu5063at 62.625 kb on + strandat 62.625 kb on + strandat 62.663 kb on - strandat 62.666 kb on - strandat 62.699 kb on + strandat 62.718 kb on - strandat 62.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spermidine (N)
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59,760 + Atu5060 0.78 +0.7
59,766 - Atu5060 0.79 +0.2
59,818 - Atu5060 0.85 -0.2
59,843 - Atu5060 0.88 +1.3
59,879 + +0.1
59,883 + -0.2
59,912 + +1.9
59,914 + -0.1
59,974 - +1.1
60,132 - Atu5061 0.24 +0.2
60,133 - Atu5061 0.24 -0.6
60,133 - Atu5061 0.24 +1.7
60,399 - Atu5061 0.59 +1.3
60,427 + Atu5061 0.63 +0.0
60,541 - Atu5061 0.78 +0.6
60,560 + Atu5061 0.81 +0.7
60,584 + Atu5061 0.84 -0.8
60,592 - Atu5061 0.85 -1.9
60,746 + -0.2
60,746 + +0.3
60,746 + -0.1
60,754 - +1.1
60,756 + +2.0
60,756 + +2.3
60,756 + +0.1
60,853 + Atu5062 0.15 +1.2
60,854 + Atu5062 0.15 -0.6
60,878 - Atu5062 0.17 +0.5
60,889 + Atu5062 0.18 +0.2
60,897 - Atu5062 0.19 +0.3
60,960 + Atu5062 0.25 -1.0
61,068 + Atu5062 0.35 +1.9
61,104 + Atu5062 0.39 +1.3
61,111 + Atu5062 0.39 +1.6
61,116 + Atu5062 0.40 +1.6
61,124 - Atu5062 0.41 +0.4
61,156 + Atu5062 0.44 +0.3
61,164 - Atu5062 0.44 +1.3
61,164 - Atu5062 0.44 +0.7
61,221 - Atu5062 0.50 -0.2
61,226 + Atu5062 0.50 +0.2
61,258 + Atu5062 0.53 +2.1
61,266 - Atu5062 0.54 +0.5
61,266 - Atu5062 0.54 -0.3
61,266 - Atu5062 0.54 -0.5
61,266 - Atu5062 0.54 +1.4
61,271 - Atu5062 0.55 +0.9
61,304 - Atu5062 0.58 +0.3
61,318 + Atu5062 0.59 +1.1
61,441 + Atu5062 0.71 -0.5
61,456 + Atu5062 0.72 +0.1
61,459 - Atu5062 0.73 +0.3
61,474 - Atu5062 0.74 +0.0
61,485 - Atu5062 0.75 +1.9
61,523 + Atu5062 0.79 +1.6
61,523 + Atu5062 0.79 +3.3
61,531 - Atu5062 0.80 +0.5
61,565 + Atu5062 0.83 +0.5
61,565 + Atu5062 0.83 +0.9
61,573 - Atu5062 0.84 +1.3
61,573 - Atu5062 0.84 +1.5
61,573 - Atu5062 0.84 -0.1
61,786 + +0.7
61,814 - +0.0
61,873 - Atu5063 0.13 +1.6
61,873 - Atu5063 0.13 +0.5
61,916 + Atu5063 0.17 -0.2
61,916 + Atu5063 0.17 +2.9
61,922 + Atu5063 0.18 +0.2
61,930 - Atu5063 0.19 -0.9
61,961 - Atu5063 0.23 -0.4
61,999 - Atu5063 0.27 -0.3
62,057 - Atu5063 0.33 +0.2
62,093 + Atu5063 0.38 +0.0
62,093 + Atu5063 0.38 -0.2
62,093 + Atu5063 0.38 +1.1
62,093 + Atu5063 0.38 -0.0
62,093 + Atu5063 0.38 +0.5
62,101 - Atu5063 0.38 +2.3
62,126 + Atu5063 0.41 -0.8
62,126 + Atu5063 0.41 -0.8
62,136 + Atu5063 0.42 -0.5
62,172 + Atu5063 0.47 +0.3
62,225 + Atu5063 0.53 +0.6
62,391 + Atu5063 0.71 -0.2
62,459 + Atu5063 0.79 +0.2
62,493 + Atu5063 0.83 +1.3
62,511 + Atu5063 0.85 +1.6
62,546 + Atu5063 0.89 -0.3
62,625 + +0.4
62,625 + +1.8
62,663 - -0.2
62,666 - +0.8
62,699 + +0.8
62,718 - +0.7
62,733 - +0.2

Or see this region's nucleotide sequence