Experiment: spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3765 and Atu3766 are separated by 99 nucleotides Atu3766 and Atu3767 overlap by 4 nucleotides
Atu3765: Atu3765 - oligoendopeptidase F, at 846,553 to 848,403
Atu3765
Atu3766: Atu3766 - hypothetical protein, at 848,503 to 849,138
Atu3766
Atu3767: Atu3767 - diguanylate cyclase, at 849,135 to 850,043
Atu3767
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 847.558 kb on - strand, within Atu3765 at 847.686 kb on - strand, within Atu3765 at 847.720 kb on + strand, within Atu3765 at 847.789 kb on - strand, within Atu3765 at 847.800 kb on - strand, within Atu3765 at 847.823 kb on + strand, within Atu3765 at 847.829 kb on - strand, within Atu3765 at 847.838 kb on + strand, within Atu3765 at 847.838 kb on + strand, within Atu3765 at 847.917 kb on + strand, within Atu3765 at 848.041 kb on - strand, within Atu3765 at 848.041 kb on - strand, within Atu3765 at 848.089 kb on + strand, within Atu3765 at 848.166 kb on + strand, within Atu3765 at 848.280 kb on + strand at 848.282 kb on + strand at 848.397 kb on + strand at 848.405 kb on - strand at 848.422 kb on - strand at 848.479 kb on - strand at 848.479 kb on - strand at 848.489 kb on + strand at 848.507 kb on - strand at 848.524 kb on - strand at 848.604 kb on - strand, within Atu3766 at 848.632 kb on + strand, within Atu3766 at 848.650 kb on - strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.698 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.847 kb on + strand, within Atu3766 at 848.887 kb on + strand, within Atu3766 at 848.901 kb on - strand, within Atu3766 at 848.983 kb on + strand, within Atu3766 at 848.991 kb on - strand, within Atu3766 at 849.007 kb on + strand, within Atu3766 at 849.018 kb on - strand, within Atu3766 at 849.022 kb on + strand, within Atu3766 at 849.030 kb on - strand, within Atu3766 at 849.120 kb on - strand at 849.142 kb on - strand at 849.268 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.733 kb on - strand, within Atu3767 at 849.750 kb on - strand, within Atu3767 at 849.815 kb on - strand, within Atu3767 at 849.857 kb on - strand, within Atu3767 at 849.992 kb on + strand at 849.995 kb on + strand at 850.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction spermidine (N) remove 847,558 - Atu3765 0.54 -0.2 847,686 - Atu3765 0.61 +0.3 847,720 + Atu3765 0.63 +0.2 847,789 - Atu3765 0.67 +0.5 847,800 - Atu3765 0.67 -0.6 847,823 + Atu3765 0.69 -0.0 847,829 - Atu3765 0.69 -0.1 847,838 + Atu3765 0.69 +0.1 847,838 + Atu3765 0.69 +0.7 847,917 + Atu3765 0.74 -0.0 848,041 - Atu3765 0.80 +0.2 848,041 - Atu3765 0.80 +2.9 848,089 + Atu3765 0.83 +0.2 848,166 + Atu3765 0.87 +0.3 848,280 + +1.0 848,282 + -0.1 848,397 + -0.2 848,405 - +0.0 848,422 - +0.5 848,479 - -0.5 848,479 - +0.4 848,489 + -0.3 848,507 - -0.2 848,524 - -0.4 848,604 - Atu3766 0.16 +0.0 848,632 + Atu3766 0.20 +0.3 848,650 - Atu3766 0.23 +1.1 848,687 + Atu3766 0.29 -1.4 848,687 + Atu3766 0.29 -0.1 848,687 + Atu3766 0.29 -0.7 848,687 + Atu3766 0.29 +0.3 848,698 + Atu3766 0.31 -0.9 848,706 + Atu3766 0.32 -0.3 848,706 + Atu3766 0.32 -1.4 848,714 - Atu3766 0.33 +0.1 848,714 - Atu3766 0.33 -0.2 848,847 + Atu3766 0.54 -2.0 848,887 + Atu3766 0.60 +0.1 848,901 - Atu3766 0.63 -0.2 848,983 + Atu3766 0.75 -0.2 848,991 - Atu3766 0.77 +0.0 849,007 + Atu3766 0.79 +0.2 849,018 - Atu3766 0.81 -0.2 849,022 + Atu3766 0.82 -0.3 849,030 - Atu3766 0.83 +0.3 849,120 - +0.3 849,142 - +0.5 849,268 - Atu3767 0.15 -0.4 849,675 - Atu3767 0.59 +0.8 849,675 - Atu3767 0.59 -0.1 849,733 - Atu3767 0.66 -0.3 849,750 - Atu3767 0.68 +0.5 849,815 - Atu3767 0.75 +0.7 849,857 - Atu3767 0.79 -0.5 849,992 + +1.0 849,995 + +0.1 850,090 + -1.0
Or see this region's nucleotide sequence