Experiment: spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3638 and Atu3639 are separated by 3 nucleotides Atu3639 and Atu3640 are separated by 2 nucleotides Atu3640 and Atu3641 overlap by 4 nucleotides
Atu3638: Atu3638 - hypothetical protein, at 690,379 to 691,503
Atu3638
Atu3639: Atu3639 - hypothetical protein, at 691,507 to 692,238
Atu3639
Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821
Atu3640
Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927
Atu3641
Position (kb) 692
693
694 Strain fitness (log2 ratio) -1
0
1
2 at 691.252 kb on - strand, within Atu3638 at 691.252 kb on - strand, within Atu3638 at 691.318 kb on - strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.362 kb on + strand, within Atu3638 at 691.363 kb on + strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.456 kb on + strand at 691.506 kb on - strand at 691.511 kb on - strand at 691.544 kb on - strand at 692.261 kb on + strand at 692.319 kb on + strand at 692.386 kb on + strand at 692.565 kb on + strand, within Atu3640 at 692.565 kb on + strand, within Atu3640 at 692.573 kb on - strand, within Atu3640 at 692.573 kb on - strand, within Atu3640 at 692.633 kb on - strand, within Atu3640 at 692.817 kb on + strand, within Atu3640 at 692.825 kb on - strand, within Atu3640 at 692.851 kb on + strand, within Atu3640 at 692.875 kb on + strand, within Atu3640 at 692.877 kb on - strand, within Atu3640 at 692.891 kb on - strand, within Atu3640 at 692.951 kb on - strand, within Atu3640 at 693.221 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.264 kb on + strand, within Atu3640 at 693.312 kb on - strand, within Atu3640 at 693.362 kb on + strand, within Atu3640 at 693.370 kb on - strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.457 kb on - strand, within Atu3640 at 693.476 kb on - strand, within Atu3640 at 693.481 kb on - strand, within Atu3640 at 693.501 kb on + strand, within Atu3640 at 693.557 kb on - strand, within Atu3640 at 693.582 kb on - strand, within Atu3640 at 693.588 kb on - strand, within Atu3640 at 693.603 kb on - strand, within Atu3640 at 693.652 kb on + strand, within Atu3640 at 693.706 kb on - strand at 693.723 kb on + strand at 693.780 kb on + strand at 693.875 kb on - strand at 693.877 kb on + strand at 693.877 kb on + strand at 693.885 kb on - strand at 693.934 kb on + strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.975 kb on + strand, within Atu3641 at 694.063 kb on + strand, within Atu3641 at 694.101 kb on + strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.215 kb on - strand, within Atu3641 at 694.253 kb on - strand, within Atu3641 at 694.256 kb on + strand, within Atu3641 at 694.321 kb on - strand, within Atu3641 at 694.373 kb on + strand, within Atu3641 at 694.443 kb on - strand, within Atu3641 at 694.539 kb on - strand, within Atu3641 at 694.685 kb on + strand, within Atu3641 at 694.693 kb on - strand, within Atu3641 at 694.743 kb on - strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.812 kb on - strand, within Atu3641
Per-strain Table
Position Strand Gene LocusTag Fraction spermidine (N) remove 691,252 - Atu3638 0.78 +0.2 691,252 - Atu3638 0.78 -0.3 691,318 - Atu3638 0.83 -0.5 691,323 + Atu3638 0.84 -0.1 691,323 + Atu3638 0.84 +0.0 691,323 + Atu3638 0.84 -0.5 691,323 + Atu3638 0.84 +0.4 691,323 + Atu3638 0.84 +0.4 691,323 + Atu3638 0.84 -0.0 691,323 + Atu3638 0.84 +0.2 691,331 - Atu3638 0.85 +2.7 691,331 - Atu3638 0.85 +0.5 691,331 - Atu3638 0.85 +0.4 691,331 - Atu3638 0.85 -0.7 691,331 - Atu3638 0.85 +0.4 691,362 + Atu3638 0.87 +0.2 691,363 + Atu3638 0.87 +0.4 691,381 - Atu3638 0.89 -0.3 691,381 - Atu3638 0.89 +1.9 691,456 + +1.7 691,506 - +0.5 691,511 - +0.3 691,544 - -1.0 692,261 + -0.1 692,319 + +0.9 692,386 + +0.0 692,565 + Atu3640 0.20 +0.3 692,565 + Atu3640 0.20 +0.4 692,573 - Atu3640 0.21 -0.0 692,573 - Atu3640 0.21 +0.6 692,633 - Atu3640 0.25 +0.8 692,817 + Atu3640 0.36 +0.7 692,825 - Atu3640 0.37 +0.4 692,851 + Atu3640 0.39 +0.8 692,875 + Atu3640 0.40 +0.1 692,877 - Atu3640 0.40 +0.5 692,891 - Atu3640 0.41 +1.0 692,951 - Atu3640 0.45 +0.3 693,221 + Atu3640 0.62 -1.3 693,246 + Atu3640 0.64 +0.4 693,246 + Atu3640 0.64 +0.6 693,246 + Atu3640 0.64 +0.8 693,264 + Atu3640 0.65 +0.4 693,312 - Atu3640 0.68 +0.0 693,362 + Atu3640 0.71 +0.3 693,370 - Atu3640 0.71 +0.4 693,451 + Atu3640 0.77 +0.4 693,451 + Atu3640 0.77 +0.4 693,457 - Atu3640 0.77 +0.4 693,476 - Atu3640 0.78 -0.2 693,481 - Atu3640 0.78 +0.7 693,501 + Atu3640 0.80 -0.7 693,557 - Atu3640 0.83 +0.4 693,582 - Atu3640 0.85 -1.1 693,588 - Atu3640 0.85 +0.8 693,603 - Atu3640 0.86 +0.0 693,652 + Atu3640 0.89 -0.1 693,706 - -0.5 693,723 + -1.4 693,780 + -0.2 693,875 - -0.3 693,877 + +0.2 693,877 + +1.3 693,885 - +0.5 693,934 + Atu3641 0.10 +0.1 693,934 - Atu3641 0.10 +0.1 693,934 - Atu3641 0.10 +0.8 693,975 + Atu3641 0.14 -0.6 694,063 + Atu3641 0.22 -0.0 694,101 + Atu3641 0.25 +0.3 694,109 - Atu3641 0.26 +0.6 694,109 - Atu3641 0.26 -0.2 694,109 - Atu3641 0.26 +0.2 694,215 - Atu3641 0.36 -0.7 694,253 - Atu3641 0.39 +0.3 694,256 + Atu3641 0.39 +0.1 694,321 - Atu3641 0.45 -0.2 694,373 + Atu3641 0.50 +0.0 694,443 - Atu3641 0.56 +0.0 694,539 - Atu3641 0.65 +0.4 694,685 + Atu3641 0.78 -0.1 694,693 - Atu3641 0.79 +0.1 694,743 - Atu3641 0.83 +0.2 694,809 + Atu3641 0.89 +0.2 694,809 + Atu3641 0.89 +1.0 694,812 - Atu3641 0.90 +0.3
Or see this region's nucleotide sequence