Experiment: spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0613 and Atu0614 are separated by 359 nucleotides Atu0614 and Atu0616 are separated by 317 nucleotides Atu0616 and Atu0619 are separated by 208 nucleotides
Atu0613: Atu0613 - ABC transporter, membrane spanning protein, at 600,771 to 602,351
Atu0613
Atu0614: Atu0614 - two component sensor kinase, at 602,711 to 606,538
Atu0614
Atu0616: Atu0616 - tRNA-His, at 606,856 to 606,932
Atu0616
Atu0619: Atu0619 - exopolyphosphatase, at 607,141 to 608,841
Atu0619
Position (kb) 602
603
604
605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.736 kb on + strand, within Atu0613 at 601.757 kb on - strand, within Atu0613 at 601.792 kb on + strand, within Atu0613 at 601.874 kb on + strand, within Atu0613 at 601.882 kb on - strand, within Atu0613 at 601.957 kb on + strand, within Atu0613 at 601.964 kb on + strand, within Atu0613 at 601.965 kb on - strand, within Atu0613 at 601.972 kb on - strand, within Atu0613 at 602.136 kb on - strand, within Atu0613 at 602.156 kb on + strand, within Atu0613 at 602.439 kb on + strand at 602.466 kb on + strand at 602.488 kb on + strand at 602.488 kb on + strand at 602.488 kb on + strand at 602.496 kb on - strand at 602.496 kb on - strand at 602.496 kb on - strand at 602.519 kb on + strand at 602.532 kb on - strand at 602.544 kb on - strand at 602.544 kb on - strand at 602.605 kb on + strand at 602.605 kb on + strand at 602.613 kb on - strand at 602.652 kb on + strand at 606.750 kb on + strand at 607.006 kb on - strand at 607.034 kb on + strand at 607.034 kb on + strand at 607.042 kb on - strand at 607.046 kb on + strand at 607.046 kb on + strand at 607.046 kb on + strand at 607.054 kb on - strand at 607.054 kb on - strand at 607.126 kb on + strand at 607.138 kb on + strand at 607.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction spermidine (N) remove 601,736 + Atu0613 0.61 -0.4 601,757 - Atu0613 0.62 +2.1 601,792 + Atu0613 0.65 +0.3 601,874 + Atu0613 0.70 +0.9 601,882 - Atu0613 0.70 +0.0 601,957 + Atu0613 0.75 -0.1 601,964 + Atu0613 0.75 -0.3 601,965 - Atu0613 0.76 +0.7 601,972 - Atu0613 0.76 -0.2 602,136 - Atu0613 0.86 -0.4 602,156 + Atu0613 0.88 +0.9 602,439 + -0.0 602,466 + +2.7 602,488 + +0.8 602,488 + -0.3 602,488 + +0.6 602,496 - +0.2 602,496 - +0.8 602,496 - -0.4 602,519 + +0.8 602,532 - -0.3 602,544 - +0.2 602,544 - -0.4 602,605 + -0.2 602,605 + -0.1 602,613 - +0.1 602,652 + -0.0 606,750 + -0.2 607,006 - +0.3 607,034 + +0.4 607,034 + -0.7 607,042 - -0.8 607,046 + -0.3 607,046 + -0.6 607,046 + +0.3 607,054 - +0.0 607,054 - +0.9 607,126 + +0.8 607,138 + +0.2 607,185 + -2.1
Or see this region's nucleotide sequence