Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2601

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2600 and GFF2601 overlap by 4 nucleotidesGFF2601 and GFF2602 are separated by 216 nucleotides GFF2600 - FIG005189: putative transferase clustered with tellurite resistance proteins TehA/TehB, at 125,683 to 126,663 GFF2600 GFF2601 - Ribosomal-protein-L7p-serine acetyltransferase, at 126,660 to 127,199 GFF2601 GFF2602 - Putative sgc region protein sgcX, at 127,416 to 128,534 GFF2602 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1at 125.722 kb on - strandat 125.722 kb on - strandat 125.757 kb on - strandat 125.946 kb on + strand, within GFF2600at 126.188 kb on + strand, within GFF2600at 126.371 kb on - strand, within GFF2600at 126.512 kb on + strand, within GFF2600at 126.513 kb on - strand, within GFF2600at 126.570 kb on - strandat 126.586 kb on - strandat 126.588 kb on + strandat 126.690 kb on - strandat 126.690 kb on - strandat 126.734 kb on + strand, within GFF2601at 126.735 kb on - strand, within GFF2601at 126.749 kb on + strand, within GFF2601at 126.803 kb on + strand, within GFF2601at 126.838 kb on + strand, within GFF2601at 126.838 kb on + strand, within GFF2601at 126.917 kb on - strand, within GFF2601at 126.958 kb on - strand, within GFF2601at 127.024 kb on - strand, within GFF2601at 127.024 kb on - strand, within GFF2601at 127.025 kb on + strand, within GFF2601at 127.025 kb on + strand, within GFF2601at 127.025 kb on + strand, within GFF2601at 127.026 kb on - strand, within GFF2601at 127.026 kb on - strand, within GFF2601at 127.236 kb on - strandat 127.240 kb on - strandat 127.270 kb on - strandat 127.352 kb on - strandat 127.549 kb on + strand, within GFF2602at 127.634 kb on + strand, within GFF2602at 127.635 kb on - strand, within GFF2602at 127.767 kb on - strand, within GFF2602at 127.773 kb on + strand, within GFF2602at 127.936 kb on + strand, within GFF2602at 127.937 kb on - strand, within GFF2602at 128.114 kb on + strand, within GFF2602

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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125,722 - -0.9
125,722 - +0.1
125,757 - +0.1
125,946 + GFF2600 0.27 -0.4
126,188 + GFF2600 0.51 -1.0
126,371 - GFF2600 0.70 +0.5
126,512 + GFF2600 0.85 +0.4
126,513 - GFF2600 0.85 +0.1
126,570 - +0.8
126,586 - +0.2
126,588 + -0.1
126,690 - +0.1
126,690 - +0.1
126,734 + GFF2601 0.14 -0.0
126,735 - GFF2601 0.14 -1.4
126,749 + GFF2601 0.16 +0.1
126,803 + GFF2601 0.26 -1.1
126,838 + GFF2601 0.33 -0.8
126,838 + GFF2601 0.33 +0.0
126,917 - GFF2601 0.48 +0.1
126,958 - GFF2601 0.55 -0.2
127,024 - GFF2601 0.67 -0.1
127,024 - GFF2601 0.67 -0.1
127,025 + GFF2601 0.68 -0.0
127,025 + GFF2601 0.68 -0.1
127,025 + GFF2601 0.68 -0.8
127,026 - GFF2601 0.68 -0.3
127,026 - GFF2601 0.68 -0.3
127,236 - -0.3
127,240 - -0.0
127,270 - -0.1
127,352 - +0.0
127,549 + GFF2602 0.12 -0.3
127,634 + GFF2602 0.19 +0.0
127,635 - GFF2602 0.20 -0.7
127,767 - GFF2602 0.31 -0.1
127,773 + GFF2602 0.32 -0.3
127,936 + GFF2602 0.46 -0.5
127,937 - GFF2602 0.47 -0.3
128,114 + GFF2602 0.62 -0.9

Or see this region's nucleotide sequence