Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1497

Experiment: LB_plus_SM_buffer with 6C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1496 and GFF1497 are separated by 27 nucleotidesGFF1497 and GFF1498 are separated by 24 nucleotides GFF1496 - FIG000325: clustered with transcription termination protein NusA, at 293 to 715 GFF1496 GFF1497 - Transcription termination protein NusA, at 743 to 2,245 GFF1497 GFF1498 - Translation initiation factor 2, at 2,270 to 4,948 GFF1498 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.081 kb on + strandat 0.095 kb on + strandat 0.533 kb on + strand, within GFF1496at 2.038 kb on + strand, within GFF1497at 2.076 kb on + strand, within GFF1497at 2.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6C2_phage 15 MOI
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81 + -3.5
95 + -0.9
533 + GFF1496 0.57 -1.7
2,038 + GFF1497 0.86 -1.3
2,076 + GFF1497 0.89 -0.8
2,203 + -0.9

Or see this region's nucleotide sequence