Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0930

Experiment: m.b. pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0928 and B158DRAFT_0929 are separated by 127 nucleotidesB158DRAFT_0929 and B158DRAFT_0930 overlap by 4 nucleotidesB158DRAFT_0930 and B158DRAFT_0931 are separated by 229 nucleotides B158DRAFT_0928: B158DRAFT_0928 - hypothetical protein, at 956,034 to 957,629 _0928 B158DRAFT_0929: B158DRAFT_0929 - Uncharacterized protein conserved in bacteria, at 957,757 to 958,446 _0929 B158DRAFT_0930: B158DRAFT_0930 - RNA polymerase sigma factor, sigma-70 family, at 958,443 to 958,991 _0930 B158DRAFT_0931: B158DRAFT_0931 - amidase, hydantoinase/carbamoylase family, at 959,221 to 960,471 _0931 Position (kb) 958 959Strain fitness (log2 ratio) -2 -1 0 1 2at 957.539 kb on - strandat 957.548 kb on + strandat 957.548 kb on + strandat 957.556 kb on - strandat 957.578 kb on - strandat 957.578 kb on - strandat 957.580 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.777 kb on + strandat 957.852 kb on + strand, within B158DRAFT_0929at 957.852 kb on + strand, within B158DRAFT_0929at 957.860 kb on - strand, within B158DRAFT_0929at 957.863 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 958.009 kb on - strand, within B158DRAFT_0929at 958.016 kb on - strand, within B158DRAFT_0929at 958.033 kb on + strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.051 kb on - strand, within B158DRAFT_0929at 958.060 kb on - strand, within B158DRAFT_0929at 958.084 kb on + strand, within B158DRAFT_0929at 958.098 kb on + strand, within B158DRAFT_0929at 958.107 kb on + strand, within B158DRAFT_0929at 958.115 kb on - strand, within B158DRAFT_0929at 958.149 kb on + strand, within B158DRAFT_0929at 958.171 kb on + strand, within B158DRAFT_0929at 958.227 kb on + strand, within B158DRAFT_0929at 958.227 kb on + strand, within B158DRAFT_0929at 958.233 kb on + strand, within B158DRAFT_0929at 958.235 kb on - strand, within B158DRAFT_0929at 958.235 kb on - strand, within B158DRAFT_0929at 958.322 kb on - strand, within B158DRAFT_0929at 958.326 kb on + strand, within B158DRAFT_0929at 958.335 kb on + strand, within B158DRAFT_0929at 958.364 kb on - strand, within B158DRAFT_0929at 958.390 kb on + strandat 958.390 kb on + strandat 958.398 kb on + strandat 958.469 kb on + strandat 958.477 kb on - strandat 958.477 kb on - strandat 958.513 kb on + strand, within B158DRAFT_0930at 958.513 kb on + strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.549 kb on - strand, within B158DRAFT_0930at 958.549 kb on - strand, within B158DRAFT_0930at 958.588 kb on + strand, within B158DRAFT_0930at 958.588 kb on + strand, within B158DRAFT_0930at 958.596 kb on - strand, within B158DRAFT_0930at 958.647 kb on + strand, within B158DRAFT_0930at 958.696 kb on + strand, within B158DRAFT_0930at 958.704 kb on - strand, within B158DRAFT_0930at 958.758 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.790 kb on + strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.798 kb on - strand, within B158DRAFT_0930at 958.815 kb on - strand, within B158DRAFT_0930at 958.975 kb on - strandat 958.977 kb on + strandat 958.990 kb on - strandat 958.991 kb on + strandat 958.991 kb on + strandat 958.991 kb on + strandat 958.999 kb on - strandat 958.999 kb on - strandat 959.051 kb on + strandat 959.079 kb on - strandat 959.084 kb on - strandat 959.119 kb on + strandat 959.123 kb on - strandat 959.133 kb on + strandat 959.152 kb on + strandat 959.162 kb on + strandat 959.162 kb on + strandat 959.170 kb on - strandat 959.237 kb on + strandat 959.240 kb on - strandat 959.240 kb on - strandat 959.277 kb on + strandat 959.285 kb on - strandat 959.285 kb on - strandat 959.285 kb on - strandat 959.314 kb on + strandat 959.314 kb on + strandat 959.314 kb on + strandat 959.314 kb on + strandat 959.316 kb on + strandat 959.322 kb on - strandat 959.322 kb on - strandat 959.322 kb on - strandat 959.322 kb on - strandat 959.324 kb on - strandat 959.394 kb on - strand, within B158DRAFT_0931at 959.394 kb on - strand, within B158DRAFT_0931at 959.395 kb on + strand, within B158DRAFT_0931at 959.395 kb on + strand, within B158DRAFT_0931at 959.493 kb on + strand, within B158DRAFT_0931at 959.514 kb on - strand, within B158DRAFT_0931at 959.535 kb on - strand, within B158DRAFT_0931at 959.559 kb on + strand, within B158DRAFT_0931at 959.559 kb on + strand, within B158DRAFT_0931at 959.604 kb on + strand, within B158DRAFT_0931at 959.612 kb on - strand, within B158DRAFT_0931at 959.612 kb on - strand, within B158DRAFT_0931at 959.612 kb on - strand, within B158DRAFT_0931at 959.620 kb on + strand, within B158DRAFT_0931at 959.659 kb on - strand, within B158DRAFT_0931at 959.692 kb on + strand, within B158DRAFT_0931at 959.715 kb on + strand, within B158DRAFT_0931at 959.760 kb on + strand, within B158DRAFT_0931at 959.784 kb on + strand, within B158DRAFT_0931at 959.792 kb on - strand, within B158DRAFT_0931at 959.797 kb on - strand, within B158DRAFT_0931at 959.886 kb on + strand, within B158DRAFT_0931at 959.886 kb on + strand, within B158DRAFT_0931at 959.888 kb on + strand, within B158DRAFT_0931at 959.888 kb on + strand, within B158DRAFT_0931at 959.888 kb on + strand, within B158DRAFT_0931at 959.896 kb on - strand, within B158DRAFT_0931at 959.896 kb on - strand, within B158DRAFT_0931at 959.896 kb on - strand, within B158DRAFT_0931at 959.920 kb on + strand, within B158DRAFT_0931at 959.921 kb on + strand, within B158DRAFT_0931at 959.921 kb on + strand, within B158DRAFT_0931at 959.929 kb on - strand, within B158DRAFT_0931at 959.945 kb on + strand, within B158DRAFT_0931at 959.950 kb on + strand, within B158DRAFT_0931at 959.958 kb on - strand, within B158DRAFT_0931

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH5.5
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957,539 - -0.3
957,548 + +0.2
957,548 + -0.5
957,556 - +0.5
957,578 - -0.5
957,578 - +0.1
957,580 + -0.7
957,585 + +0.5
957,585 + -1.6
957,585 + -0.3
957,585 + +0.6
957,585 + -0.3
957,585 + -0.2
957,585 + +0.1
957,593 - +0.1
957,593 - -0.3
957,593 - -0.0
957,593 - -0.6
957,593 - +0.2
957,593 - -0.2
957,593 - -0.4
957,593 - -0.1
957,593 - -0.1
957,777 + +0.3
957,852 + B158DRAFT_0929 0.14 -0.5
957,852 + B158DRAFT_0929 0.14 -0.2
957,860 - B158DRAFT_0929 0.15 +0.4
957,863 + B158DRAFT_0929 0.15 +0.1
957,973 + B158DRAFT_0929 0.31 -0.2
957,973 + B158DRAFT_0929 0.31 +0.2
957,973 + B158DRAFT_0929 0.31 -0.4
957,973 + B158DRAFT_0929 0.31 -0.5
957,973 + B158DRAFT_0929 0.31 -0.0
957,981 - B158DRAFT_0929 0.32 +0.2
957,981 - B158DRAFT_0929 0.32 +0.5
957,981 - B158DRAFT_0929 0.32 -0.5
957,981 - B158DRAFT_0929 0.32 -0.3
957,981 - B158DRAFT_0929 0.32 -0.3
958,009 - B158DRAFT_0929 0.37 -0.7
958,016 - B158DRAFT_0929 0.38 -0.1
958,033 + B158DRAFT_0929 0.40 +0.4
958,041 - B158DRAFT_0929 0.41 -0.2
958,041 - B158DRAFT_0929 0.41 -1.2
958,041 - B158DRAFT_0929 0.41 -0.5
958,051 - B158DRAFT_0929 0.43 +0.4
958,060 - B158DRAFT_0929 0.44 +0.3
958,084 + B158DRAFT_0929 0.47 -0.4
958,098 + B158DRAFT_0929 0.49 -1.3
958,107 + B158DRAFT_0929 0.51 -1.5
958,115 - B158DRAFT_0929 0.52 -0.4
958,149 + B158DRAFT_0929 0.57 -0.3
958,171 + B158DRAFT_0929 0.60 +0.3
958,227 + B158DRAFT_0929 0.68 -0.4
958,227 + B158DRAFT_0929 0.68 +0.5
958,233 + B158DRAFT_0929 0.69 -0.6
958,235 - B158DRAFT_0929 0.69 -0.3
958,235 - B158DRAFT_0929 0.69 -0.1
958,322 - B158DRAFT_0929 0.82 -0.6
958,326 + B158DRAFT_0929 0.82 +0.9
958,335 + B158DRAFT_0929 0.84 -0.2
958,364 - B158DRAFT_0929 0.88 -0.2
958,390 + -0.2
958,390 + -0.1
958,398 + -0.3
958,469 + -2.0
958,477 - -1.8
958,477 - -0.9
958,513 + B158DRAFT_0930 0.13 -0.5
958,513 + B158DRAFT_0930 0.13 +0.4
958,521 - B158DRAFT_0930 0.14 -0.3
958,521 - B158DRAFT_0930 0.14 -0.5
958,521 - B158DRAFT_0930 0.14 +0.2
958,521 - B158DRAFT_0930 0.14 +0.0
958,549 - B158DRAFT_0930 0.19 +0.3
958,549 - B158DRAFT_0930 0.19 -0.5
958,588 + B158DRAFT_0930 0.26 -0.3
958,588 + B158DRAFT_0930 0.26 +0.8
958,596 - B158DRAFT_0930 0.28 -0.3
958,647 + B158DRAFT_0930 0.37 -0.2
958,696 + B158DRAFT_0930 0.46 +0.2
958,704 - B158DRAFT_0930 0.48 +2.0
958,758 + B158DRAFT_0930 0.57 -0.3
958,790 + B158DRAFT_0930 0.63 +0.0
958,790 + B158DRAFT_0930 0.63 +0.3
958,790 + B158DRAFT_0930 0.63 +0.0
958,790 + B158DRAFT_0930 0.63 -1.3
958,790 + B158DRAFT_0930 0.63 -0.5
958,790 + B158DRAFT_0930 0.63 +0.0
958,790 + B158DRAFT_0930 0.63 -0.3
958,790 + B158DRAFT_0930 0.63 -0.4
958,790 + B158DRAFT_0930 0.63 -0.3
958,790 + B158DRAFT_0930 0.63 -0.1
958,790 + B158DRAFT_0930 0.63 -0.1
958,790 + B158DRAFT_0930 0.63 -0.1
958,790 + B158DRAFT_0930 0.63 +0.2
958,790 + B158DRAFT_0930 0.63 -0.2
958,790 + B158DRAFT_0930 0.63 -0.0
958,790 + B158DRAFT_0930 0.63 +0.1
958,798 - B158DRAFT_0930 0.65 +0.1
958,798 - B158DRAFT_0930 0.65 -0.4
958,798 - B158DRAFT_0930 0.65 +0.8
958,798 - B158DRAFT_0930 0.65 -0.1
958,798 - B158DRAFT_0930 0.65 +0.5
958,798 - B158DRAFT_0930 0.65 -0.1
958,798 - B158DRAFT_0930 0.65 -1.3
958,798 - B158DRAFT_0930 0.65 +1.2
958,798 - B158DRAFT_0930 0.65 +0.0
958,798 - B158DRAFT_0930 0.65 -0.3
958,798 - B158DRAFT_0930 0.65 +0.4
958,798 - B158DRAFT_0930 0.65 +0.3
958,798 - B158DRAFT_0930 0.65 +0.2
958,798 - B158DRAFT_0930 0.65 +1.2
958,798 - B158DRAFT_0930 0.65 +0.1
958,798 - B158DRAFT_0930 0.65 -0.3
958,798 - B158DRAFT_0930 0.65 +0.2
958,798 - B158DRAFT_0930 0.65 +0.2
958,798 - B158DRAFT_0930 0.65 -0.1
958,798 - B158DRAFT_0930 0.65 +0.2
958,798 - B158DRAFT_0930 0.65 +0.2
958,798 - B158DRAFT_0930 0.65 -0.3
958,798 - B158DRAFT_0930 0.65 -0.3
958,815 - B158DRAFT_0930 0.68 +0.3
958,975 - -0.2
958,977 + -0.4
958,990 - -0.4
958,991 + -0.1
958,991 + -0.1
958,991 + -0.2
958,999 - -0.4
958,999 - +1.1
959,051 + -0.3
959,079 - +0.5
959,084 - -0.1
959,119 + -0.1
959,123 - -0.8
959,133 + -0.3
959,152 + -0.3
959,162 + -0.1
959,162 + -0.0
959,170 - -0.4
959,237 + +0.2
959,240 - +0.2
959,240 - +0.1
959,277 + -0.2
959,285 - -0.5
959,285 - +0.0
959,285 - -0.4
959,314 + +0.4
959,314 + +0.2
959,314 + -0.6
959,314 + -0.1
959,316 + +0.3
959,322 - +1.9
959,322 - -0.5
959,322 - -0.1
959,322 - +0.2
959,324 - -0.1
959,394 - B158DRAFT_0931 0.14 +0.4
959,394 - B158DRAFT_0931 0.14 -0.1
959,395 + B158DRAFT_0931 0.14 -0.2
959,395 + B158DRAFT_0931 0.14 -0.3
959,493 + B158DRAFT_0931 0.22 -0.0
959,514 - B158DRAFT_0931 0.23 -0.4
959,535 - B158DRAFT_0931 0.25 -0.1
959,559 + B158DRAFT_0931 0.27 -0.5
959,559 + B158DRAFT_0931 0.27 +0.6
959,604 + B158DRAFT_0931 0.31 +0.4
959,612 - B158DRAFT_0931 0.31 -0.2
959,612 - B158DRAFT_0931 0.31 -0.3
959,612 - B158DRAFT_0931 0.31 -0.3
959,620 + B158DRAFT_0931 0.32 +0.7
959,659 - B158DRAFT_0931 0.35 -0.1
959,692 + B158DRAFT_0931 0.38 -0.1
959,715 + B158DRAFT_0931 0.39 +0.1
959,760 + B158DRAFT_0931 0.43 +0.3
959,784 + B158DRAFT_0931 0.45 +0.1
959,792 - B158DRAFT_0931 0.46 +0.5
959,797 - B158DRAFT_0931 0.46 +0.1
959,886 + B158DRAFT_0931 0.53 -0.3
959,886 + B158DRAFT_0931 0.53 -0.6
959,888 + B158DRAFT_0931 0.53 -0.1
959,888 + B158DRAFT_0931 0.53 -0.1
959,888 + B158DRAFT_0931 0.53 +0.4
959,896 - B158DRAFT_0931 0.54 -0.3
959,896 - B158DRAFT_0931 0.54 -0.2
959,896 - B158DRAFT_0931 0.54 -0.1
959,920 + B158DRAFT_0931 0.56 -0.2
959,921 + B158DRAFT_0931 0.56 -0.1
959,921 + B158DRAFT_0931 0.56 +0.1
959,929 - B158DRAFT_0931 0.57 -0.0
959,945 + B158DRAFT_0931 0.58 +0.2
959,950 + B158DRAFT_0931 0.58 +1.3
959,958 - B158DRAFT_0931 0.59 -0.3

Or see this region's nucleotide sequence