Strain Fitness in Agrobacterium fabrum C58 around Atu5024

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5023 and Atu5024 are separated by 29 nucleotidesAtu5024 and Atu5025 are separated by 48 nucleotidesAtu5025 and Atu5026 are separated by 99 nucleotidesAtu5026 and Atu5027 are separated by 120 nucleotides Atu5023: Atu5023 - hypothetical protein, at 24,428 to 26,161 Atu5023 Atu5024: Atu5024 - ATP-dependent DNA helicase, at 26,191 to 27,891 Atu5024 Atu5025: Atu5025 - hypothetical protein, at 27,940 to 28,194 Atu5025 Atu5026: Atu5026 - hypothetical protein, at 28,294 to 28,704 Atu5026 Atu5027: Atu5027 - IS 426 transposase, at 28,825 to 29,379 Atu5027 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 25.252 kb on - strand, within Atu5023at 25.270 kb on + strand, within Atu5023at 25.275 kb on + strand, within Atu5023at 25.278 kb on - strand, within Atu5023at 25.278 kb on - strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.280 kb on + strand, within Atu5023at 25.282 kb on + strand, within Atu5023at 25.282 kb on + strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.288 kb on - strand, within Atu5023at 25.290 kb on - strand, within Atu5023at 25.433 kb on + strand, within Atu5023at 25.446 kb on - strand, within Atu5023at 25.453 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.483 kb on + strand, within Atu5023at 25.491 kb on - strand, within Atu5023at 25.492 kb on + strand, within Atu5023at 25.519 kb on + strand, within Atu5023at 25.529 kb on + strand, within Atu5023at 25.529 kb on + strand, within Atu5023at 25.537 kb on - strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.564 kb on + strand, within Atu5023at 25.572 kb on - strand, within Atu5023at 25.585 kb on + strand, within Atu5023at 25.606 kb on + strand, within Atu5023at 25.610 kb on + strand, within Atu5023at 25.611 kb on + strand, within Atu5023at 25.619 kb on - strand, within Atu5023at 25.637 kb on + strand, within Atu5023at 25.637 kb on + strand, within Atu5023at 25.640 kb on - strand, within Atu5023at 25.645 kb on - strand, within Atu5023at 25.647 kb on + strand, within Atu5023at 25.650 kb on - strand, within Atu5023at 25.655 kb on - strand, within Atu5023at 25.663 kb on - strand, within Atu5023at 25.767 kb on - strand, within Atu5023at 25.911 kb on + strand, within Atu5023at 25.913 kb on - strand, within Atu5023at 25.934 kb on - strand, within Atu5023at 26.044 kb on - strandat 26.044 kb on - strandat 26.074 kb on - strandat 26.086 kb on + strandat 26.094 kb on - strandat 26.135 kb on + strandat 26.143 kb on - strandat 26.169 kb on + strandat 26.211 kb on - strandat 26.390 kb on + strand, within Atu5024at 26.417 kb on - strand, within Atu5024at 26.427 kb on - strand, within Atu5024at 26.433 kb on + strand, within Atu5024at 26.533 kb on + strand, within Atu5024at 26.541 kb on - strand, within Atu5024at 26.541 kb on - strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.543 kb on + strand, within Atu5024at 26.551 kb on - strand, within Atu5024at 26.614 kb on - strand, within Atu5024at 26.667 kb on + strand, within Atu5024at 26.706 kb on + strand, within Atu5024at 26.706 kb on + strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.714 kb on - strand, within Atu5024at 26.737 kb on + strand, within Atu5024at 26.746 kb on - strand, within Atu5024at 26.758 kb on - strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.771 kb on + strand, within Atu5024at 26.779 kb on - strand, within Atu5024at 26.791 kb on + strand, within Atu5024at 26.810 kb on + strand, within Atu5024at 26.871 kb on + strand, within Atu5024at 26.880 kb on + strand, within Atu5024at 26.944 kb on - strand, within Atu5024at 27.042 kb on - strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.044 kb on + strand, within Atu5024at 27.054 kb on + strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.062 kb on - strand, within Atu5024at 27.158 kb on - strand, within Atu5024at 27.192 kb on - strand, within Atu5024at 27.194 kb on - strand, within Atu5024at 27.211 kb on - strand, within Atu5024at 27.220 kb on + strand, within Atu5024at 27.221 kb on + strand, within Atu5024at 27.259 kb on - strand, within Atu5024at 27.263 kb on - strand, within Atu5024at 27.263 kb on - strand, within Atu5024at 27.278 kb on - strand, within Atu5024at 27.308 kb on - strand, within Atu5024at 27.321 kb on - strand, within Atu5024at 27.328 kb on - strand, within Atu5024at 27.332 kb on - strand, within Atu5024at 27.365 kb on - strand, within Atu5024at 27.377 kb on + strand, within Atu5024at 27.377 kb on + strand, within Atu5024at 27.384 kb on - strand, within Atu5024at 27.385 kb on - strand, within Atu5024at 27.454 kb on - strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.505 kb on + strand, within Atu5024at 27.507 kb on + strand, within Atu5024at 27.513 kb on - strand, within Atu5024at 27.515 kb on - strand, within Atu5024at 27.590 kb on - strand, within Atu5024at 27.597 kb on + strand, within Atu5024at 27.650 kb on - strand, within Atu5024at 27.766 kb on + strandat 27.771 kb on + strandat 27.774 kb on - strandat 27.831 kb on - strandat 27.859 kb on + strandat 27.943 kb on + strandat 27.951 kb on + strandat 27.951 kb on - strandat 28.024 kb on + strand, within Atu5025at 28.032 kb on - strand, within Atu5025at 28.037 kb on - strand, within Atu5025at 28.042 kb on - strand, within Atu5025at 28.042 kb on - strand, within Atu5025at 28.065 kb on - strand, within Atu5025at 28.094 kb on + strand, within Atu5025at 28.100 kb on - strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.141 kb on + strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.149 kb on - strand, within Atu5025at 28.154 kb on - strand, within Atu5025at 28.189 kb on + strandat 28.195 kb on - strandat 28.202 kb on - strandat 28.213 kb on + strandat 28.248 kb on + strandat 28.264 kb on + strandat 28.273 kb on + strandat 28.282 kb on + strandat 28.290 kb on - strandat 28.305 kb on - strandat 28.321 kb on + strandat 28.386 kb on - strand, within Atu5026at 28.399 kb on + strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.517 kb on - strand, within Atu5026at 28.639 kb on + strand, within Atu5026at 28.641 kb on - strand, within Atu5026at 28.684 kb on - strandat 28.684 kb on - strandat 28.809 kb on + strandat 28.846 kb on - strandat 28.848 kb on + strandat 28.848 kb on + strandat 28.856 kb on + strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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25,252 - Atu5023 0.48 +0.4
25,270 + Atu5023 0.49 +0.9
25,275 + Atu5023 0.49 +0.1
25,278 - Atu5023 0.49 -0.2
25,278 - Atu5023 0.49 +1.4
25,280 + Atu5023 0.49 +0.2
25,280 + Atu5023 0.49 -0.3
25,280 + Atu5023 0.49 +1.2
25,282 + Atu5023 0.49 +0.7
25,282 + Atu5023 0.49 +1.4
25,288 - Atu5023 0.50 +2.4
25,288 - Atu5023 0.50 +1.2
25,288 - Atu5023 0.50 +5.4
25,290 - Atu5023 0.50 +0.6
25,433 + Atu5023 0.58 +0.4
25,446 - Atu5023 0.59 +1.4
25,453 + Atu5023 0.59 +2.8
25,483 + Atu5023 0.61 +0.5
25,483 + Atu5023 0.61 +0.1
25,483 + Atu5023 0.61 -1.1
25,491 - Atu5023 0.61 +0.5
25,492 + Atu5023 0.61 +1.4
25,519 + Atu5023 0.63 +0.7
25,529 + Atu5023 0.63 +0.2
25,529 + Atu5023 0.63 +0.1
25,537 - Atu5023 0.64 -1.1
25,564 + Atu5023 0.66 +2.8
25,564 + Atu5023 0.66 -0.5
25,564 + Atu5023 0.66 +1.1
25,572 - Atu5023 0.66 +1.0
25,585 + Atu5023 0.67 -0.4
25,606 + Atu5023 0.68 +3.6
25,610 + Atu5023 0.68 +2.5
25,611 + Atu5023 0.68 -0.6
25,619 - Atu5023 0.69 +0.3
25,637 + Atu5023 0.70 +0.6
25,637 + Atu5023 0.70 +0.1
25,640 - Atu5023 0.70 -0.8
25,645 - Atu5023 0.70 +0.6
25,647 + Atu5023 0.70 +0.4
25,650 - Atu5023 0.70 -0.3
25,655 - Atu5023 0.71 +3.4
25,663 - Atu5023 0.71 +1.0
25,767 - Atu5023 0.77 +1.0
25,911 + Atu5023 0.86 -0.1
25,913 - Atu5023 0.86 -1.3
25,934 - Atu5023 0.87 -0.9
26,044 - -1.6
26,044 - +1.8
26,074 - +1.1
26,086 + +0.4
26,094 - +1.2
26,135 + +0.9
26,143 - +0.0
26,169 + -2.5
26,211 - +0.6
26,390 + Atu5024 0.12 +1.0
26,417 - Atu5024 0.13 +0.4
26,427 - Atu5024 0.14 +1.9
26,433 + Atu5024 0.14 +0.1
26,533 + Atu5024 0.20 +0.6
26,541 - Atu5024 0.21 -0.6
26,541 - Atu5024 0.21 +2.4
26,543 + Atu5024 0.21 -0.0
26,543 + Atu5024 0.21 -0.8
26,543 + Atu5024 0.21 +1.5
26,543 + Atu5024 0.21 +2.0
26,551 - Atu5024 0.21 +1.4
26,614 - Atu5024 0.25 -0.6
26,667 + Atu5024 0.28 +0.3
26,706 + Atu5024 0.30 +1.0
26,706 + Atu5024 0.30 +0.3
26,714 - Atu5024 0.31 +1.4
26,714 - Atu5024 0.31 +0.3
26,714 - Atu5024 0.31 +1.8
26,737 + Atu5024 0.32 -0.7
26,746 - Atu5024 0.33 -0.3
26,758 - Atu5024 0.33 +2.0
26,771 + Atu5024 0.34 +1.5
26,771 + Atu5024 0.34 -1.1
26,771 + Atu5024 0.34 +0.7
26,779 - Atu5024 0.35 +2.4
26,791 + Atu5024 0.35 +0.9
26,810 + Atu5024 0.36 +0.3
26,871 + Atu5024 0.40 +1.4
26,880 + Atu5024 0.41 +0.8
26,944 - Atu5024 0.44 +0.0
27,042 - Atu5024 0.50 +0.2
27,044 + Atu5024 0.50 +1.9
27,044 + Atu5024 0.50 +0.4
27,054 + Atu5024 0.51 -0.3
27,062 - Atu5024 0.51 +0.6
27,062 - Atu5024 0.51 +0.9
27,158 - Atu5024 0.57 -0.8
27,192 - Atu5024 0.59 +2.4
27,194 - Atu5024 0.59 +0.0
27,211 - Atu5024 0.60 -0.6
27,220 + Atu5024 0.60 +1.0
27,221 + Atu5024 0.61 +1.8
27,259 - Atu5024 0.63 -0.9
27,263 - Atu5024 0.63 +0.0
27,263 - Atu5024 0.63 +2.4
27,278 - Atu5024 0.64 +0.7
27,308 - Atu5024 0.66 +0.0
27,321 - Atu5024 0.66 -0.5
27,328 - Atu5024 0.67 +0.2
27,332 - Atu5024 0.67 +2.0
27,365 - Atu5024 0.69 +0.9
27,377 + Atu5024 0.70 +1.4
27,377 + Atu5024 0.70 +0.1
27,384 - Atu5024 0.70 +0.4
27,385 - Atu5024 0.70 +0.2
27,454 - Atu5024 0.74 +0.4
27,505 + Atu5024 0.77 +1.0
27,505 + Atu5024 0.77 +1.0
27,505 + Atu5024 0.77 +0.6
27,507 + Atu5024 0.77 +1.3
27,513 - Atu5024 0.78 +0.8
27,515 - Atu5024 0.78 +0.5
27,590 - Atu5024 0.82 -0.1
27,597 + Atu5024 0.83 +0.4
27,650 - Atu5024 0.86 +1.5
27,766 + +1.8
27,771 + +1.2
27,774 - +0.2
27,831 - +1.2
27,859 + +0.5
27,943 + +0.2
27,951 + +0.9
27,951 - -1.6
28,024 + Atu5025 0.33 -0.0
28,032 - Atu5025 0.36 +0.8
28,037 - Atu5025 0.38 +0.5
28,042 - Atu5025 0.40 -0.5
28,042 - Atu5025 0.40 +0.4
28,065 - Atu5025 0.49 +0.8
28,094 + Atu5025 0.60 -0.4
28,100 - Atu5025 0.63 -0.7
28,141 + Atu5025 0.79 +0.6
28,141 + Atu5025 0.79 +1.2
28,141 + Atu5025 0.79 +1.0
28,141 + Atu5025 0.79 -0.3
28,141 + Atu5025 0.79 -1.0
28,141 + Atu5025 0.79 -0.3
28,149 - Atu5025 0.82 +0.5
28,149 - Atu5025 0.82 +0.4
28,149 - Atu5025 0.82 +0.2
28,149 - Atu5025 0.82 -0.8
28,149 - Atu5025 0.82 -1.0
28,149 - Atu5025 0.82 +0.3
28,149 - Atu5025 0.82 +1.9
28,154 - Atu5025 0.84 -0.1
28,189 + -0.8
28,195 - +1.8
28,202 - -1.1
28,213 + -1.1
28,248 + +0.4
28,264 + +0.3
28,273 + +1.0
28,282 + +2.5
28,290 - -0.8
28,305 - +1.6
28,321 + -0.9
28,386 - Atu5026 0.22 +1.5
28,399 + Atu5026 0.26 +0.1
28,407 - Atu5026 0.27 -1.2
28,407 - Atu5026 0.27 -0.3
28,517 - Atu5026 0.54 -0.2
28,639 + Atu5026 0.84 +0.3
28,641 - Atu5026 0.84 +0.1
28,684 - +0.4
28,684 - +1.4
28,809 + +1.2
28,846 - -0.7
28,848 + +0.5
28,848 + +0.9
28,856 + -0.4
28,856 - -0.9
28,856 - +1.8
28,856 - +0.8
28,856 - +1.5
28,864 - +0.8

Or see this region's nucleotide sequence