Strain Fitness in Agrobacterium fabrum C58 around Atu0197

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0195 and Atu0196 are separated by 105 nucleotidesAtu0196 and Atu0197 overlap by 4 nucleotidesAtu0197 and Atu0198 overlap by 4 nucleotides Atu0195: Atu0195 - gluconokinase, at 199,684 to 200,175 Atu0195 Atu0196: Atu0196 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 200,281 to 201,021 Atu0196 Atu0197: Atu0197 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine), at 201,018 to 201,956 Atu0197 Atu0198: Atu0198 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 201,953 to 203,098 Atu0198 Position (kb) 201 202Strain fitness (log2 ratio) -2 -1 0 1 2at 200.134 kb on + strandat 200.141 kb on + strandat 200.149 kb on - strandat 200.199 kb on + strandat 200.207 kb on - strandat 200.395 kb on + strand, within Atu0196at 200.481 kb on + strand, within Atu0196at 200.544 kb on + strand, within Atu0196at 200.605 kb on - strand, within Atu0196at 200.605 kb on - strand, within Atu0196at 200.605 kb on - strand, within Atu0196at 200.813 kb on + strand, within Atu0196at 200.816 kb on - strand, within Atu0196at 200.816 kb on - strand, within Atu0196at 200.865 kb on + strand, within Atu0196at 200.889 kb on + strand, within Atu0196at 201.066 kb on + strandat 201.085 kb on - strandat 201.128 kb on - strand, within Atu0197at 201.134 kb on + strand, within Atu0197at 201.181 kb on - strand, within Atu0197at 201.207 kb on + strand, within Atu0197at 201.215 kb on - strand, within Atu0197at 201.306 kb on + strand, within Atu0197at 201.306 kb on + strand, within Atu0197at 201.429 kb on + strand, within Atu0197at 201.429 kb on + strand, within Atu0197at 201.437 kb on - strand, within Atu0197at 201.524 kb on - strand, within Atu0197at 201.586 kb on - strand, within Atu0197at 201.597 kb on - strand, within Atu0197at 201.691 kb on + strand, within Atu0197at 201.853 kb on - strand, within Atu0197at 201.874 kb on - strandat 201.970 kb on + strandat 202.000 kb on - strandat 202.001 kb on + strandat 202.050 kb on + strandat 202.060 kb on + strandat 202.060 kb on + strandat 202.067 kb on + strandat 202.067 kb on + strandat 202.067 kb on + strandat 202.075 kb on - strand, within Atu0198at 202.163 kb on - strand, within Atu0198at 202.243 kb on + strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.251 kb on - strand, within Atu0198at 202.382 kb on - strand, within Atu0198at 202.434 kb on + strand, within Atu0198at 202.442 kb on - strand, within Atu0198at 202.442 kb on - strand, within Atu0198at 202.468 kb on - strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.481 kb on + strand, within Atu0198at 202.489 kb on - strand, within Atu0198at 202.510 kb on + strand, within Atu0198at 202.596 kb on - strand, within Atu0198at 202.623 kb on + strand, within Atu0198at 202.631 kb on - strand, within Atu0198at 202.722 kb on + strand, within Atu0198at 202.730 kb on - strand, within Atu0198at 202.766 kb on - strand, within Atu0198at 202.824 kb on - strand, within Atu0198at 202.956 kb on + strand, within Atu0198

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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200,134 + +1.1
200,141 + -0.5
200,149 - -0.1
200,199 + +0.5
200,207 - +0.2
200,395 + Atu0196 0.15 +1.0
200,481 + Atu0196 0.27 -0.4
200,544 + Atu0196 0.35 +0.7
200,605 - Atu0196 0.44 +0.6
200,605 - Atu0196 0.44 +0.2
200,605 - Atu0196 0.44 +0.2
200,813 + Atu0196 0.72 +0.3
200,816 - Atu0196 0.72 +0.6
200,816 - Atu0196 0.72 -0.3
200,865 + Atu0196 0.79 -0.7
200,889 + Atu0196 0.82 -0.9
201,066 + +1.2
201,085 - -0.5
201,128 - Atu0197 0.12 -0.1
201,134 + Atu0197 0.12 -0.2
201,181 - Atu0197 0.17 -0.2
201,207 + Atu0197 0.20 +1.2
201,215 - Atu0197 0.21 +0.6
201,306 + Atu0197 0.31 +1.1
201,306 + Atu0197 0.31 +0.0
201,429 + Atu0197 0.44 -0.2
201,429 + Atu0197 0.44 -2.5
201,437 - Atu0197 0.45 -0.2
201,524 - Atu0197 0.54 -0.1
201,586 - Atu0197 0.60 +0.8
201,597 - Atu0197 0.62 +0.1
201,691 + Atu0197 0.72 -1.5
201,853 - Atu0197 0.89 -0.3
201,874 - -0.2
201,970 + +0.2
202,000 - +0.6
202,001 + +0.6
202,050 + +2.5
202,060 + +0.2
202,060 + +0.9
202,067 + +0.0
202,067 + -1.3
202,067 + +0.6
202,075 - Atu0198 0.11 -0.0
202,163 - Atu0198 0.18 +0.6
202,243 + Atu0198 0.25 +0.1
202,251 - Atu0198 0.26 +0.5
202,251 - Atu0198 0.26 -0.2
202,251 - Atu0198 0.26 -0.6
202,382 - Atu0198 0.37 -1.1
202,434 + Atu0198 0.42 -0.6
202,442 - Atu0198 0.43 +0.1
202,442 - Atu0198 0.43 +0.2
202,468 - Atu0198 0.45 +0.2
202,481 + Atu0198 0.46 +0.4
202,481 + Atu0198 0.46 +0.1
202,481 + Atu0198 0.46 -0.1
202,481 + Atu0198 0.46 -0.6
202,481 + Atu0198 0.46 -0.2
202,489 - Atu0198 0.47 +0.1
202,510 + Atu0198 0.49 -0.5
202,596 - Atu0198 0.56 -0.1
202,623 + Atu0198 0.58 -0.2
202,631 - Atu0198 0.59 +0.7
202,722 + Atu0198 0.67 -0.5
202,730 - Atu0198 0.68 -0.0
202,766 - Atu0198 0.71 +0.2
202,824 - Atu0198 0.76 +0.3
202,956 + Atu0198 0.88 +0.3

Or see this region's nucleotide sequence