Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4238 and PfGW456L13_4239 overlap by 4 nucleotides PfGW456L13_4239 and PfGW456L13_4240 overlap by 8 nucleotides PfGW456L13_4240 and PfGW456L13_4241 overlap by 4 nucleotides
PfGW456L13_4238 - Cobyric acid synthase (EC 6.3.5.10), at 4,751,673 to 4,753,124
_4238
PfGW456L13_4239 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 4,753,121 to 4,754,113
_4239
PfGW456L13_4240 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 4,754,106 to 4,755,014
_4240
PfGW456L13_4241 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 4,755,011 to 4,755,661
_4241
Position (kb)
4753
4754
4755 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4752.251 kb on + strand, within PfGW456L13_4238 at 4752.451 kb on + strand, within PfGW456L13_4238 at 4752.600 kb on + strand, within PfGW456L13_4238 at 4753.166 kb on + strand at 4753.792 kb on - strand, within PfGW456L13_4239 at 4753.929 kb on + strand, within PfGW456L13_4239 at 4754.063 kb on + strand at 4754.063 kb on + strand at 4754.063 kb on + strand at 4754.063 kb on + strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.064 kb on - strand at 4754.114 kb on - strand at 4754.148 kb on + strand at 4754.155 kb on - strand at 4754.389 kb on + strand, within PfGW456L13_4240 at 4754.389 kb on + strand, within PfGW456L13_4240 at 4754.389 kb on + strand, within PfGW456L13_4240 at 4754.389 kb on + strand, within PfGW456L13_4240 at 4754.390 kb on - strand, within PfGW456L13_4240 at 4754.390 kb on - strand, within PfGW456L13_4240 at 4754.390 kb on - strand, within PfGW456L13_4240 at 4754.390 kb on - strand, within PfGW456L13_4240 at 4754.390 kb on - strand, within PfGW456L13_4240 at 4754.419 kb on + strand, within PfGW456L13_4240 at 4754.419 kb on + strand, within PfGW456L13_4240 at 4754.419 kb on + strand, within PfGW456L13_4240 at 4754.419 kb on + strand, within PfGW456L13_4240 at 4754.419 kb on + strand, within PfGW456L13_4240 at 4754.420 kb on - strand, within PfGW456L13_4240 at 4754.420 kb on - strand, within PfGW456L13_4240 at 4754.420 kb on - strand, within PfGW456L13_4240 at 4754.420 kb on - strand, within PfGW456L13_4240 at 4754.420 kb on - strand, within PfGW456L13_4240 at 4754.504 kb on + strand, within PfGW456L13_4240 at 4754.505 kb on - strand, within PfGW456L13_4240 at 4754.662 kb on + strand, within PfGW456L13_4240 at 4754.662 kb on + strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.663 kb on - strand, within PfGW456L13_4240 at 4754.696 kb on + strand, within PfGW456L13_4240 at 4754.696 kb on + strand, within PfGW456L13_4240 at 4754.761 kb on + strand, within PfGW456L13_4240 at 4754.761 kb on + strand, within PfGW456L13_4240 at 4754.794 kb on + strand, within PfGW456L13_4240 at 4754.794 kb on + strand, within PfGW456L13_4240 at 4754.794 kb on + strand, within PfGW456L13_4240 at 4754.795 kb on - strand, within PfGW456L13_4240 at 4754.824 kb on - strand, within PfGW456L13_4240 at 4755.053 kb on + strand at 4755.053 kb on + strand at 4755.053 kb on + strand at 4755.103 kb on - strand, within PfGW456L13_4241
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,752,251 + PfGW456L13_4238 0.40 -2.0 4,752,451 + PfGW456L13_4238 0.54 -0.8 4,752,600 + PfGW456L13_4238 0.64 -1.2 4,753,166 + -1.4 4,753,792 - PfGW456L13_4239 0.68 -0.1 4,753,929 + PfGW456L13_4239 0.81 -1.0 4,754,063 + +0.2 4,754,063 + +0.9 4,754,063 + -2.0 4,754,063 + -0.1 4,754,064 - -0.4 4,754,064 - +0.0 4,754,064 - -1.0 4,754,064 - -0.5 4,754,064 - -0.6 4,754,064 - +0.2 4,754,064 - -1.4 4,754,064 - +0.0 4,754,064 - -0.5 4,754,064 - -0.7 4,754,114 - -0.9 4,754,148 + -1.7 4,754,155 - -0.9 4,754,389 + PfGW456L13_4240 0.31 +0.8 4,754,389 + PfGW456L13_4240 0.31 -2.2 4,754,389 + PfGW456L13_4240 0.31 -2.8 4,754,389 + PfGW456L13_4240 0.31 +0.5 4,754,390 - PfGW456L13_4240 0.31 -1.6 4,754,390 - PfGW456L13_4240 0.31 -3.7 4,754,390 - PfGW456L13_4240 0.31 +0.0 4,754,390 - PfGW456L13_4240 0.31 +0.6 4,754,390 - PfGW456L13_4240 0.31 -0.1 4,754,419 + PfGW456L13_4240 0.34 +0.4 4,754,419 + PfGW456L13_4240 0.34 -0.6 4,754,419 + PfGW456L13_4240 0.34 -0.8 4,754,419 + PfGW456L13_4240 0.34 -1.3 4,754,419 + PfGW456L13_4240 0.34 -0.9 4,754,420 - PfGW456L13_4240 0.35 -1.6 4,754,420 - PfGW456L13_4240 0.35 -1.5 4,754,420 - PfGW456L13_4240 0.35 -0.4 4,754,420 - PfGW456L13_4240 0.35 -0.1 4,754,420 - PfGW456L13_4240 0.35 +0.2 4,754,504 + PfGW456L13_4240 0.44 -0.6 4,754,505 - PfGW456L13_4240 0.44 +0.1 4,754,662 + PfGW456L13_4240 0.61 -0.0 4,754,662 + PfGW456L13_4240 0.61 -0.3 4,754,663 - PfGW456L13_4240 0.61 +0.2 4,754,663 - PfGW456L13_4240 0.61 -0.0 4,754,663 - PfGW456L13_4240 0.61 -1.3 4,754,663 - PfGW456L13_4240 0.61 +0.6 4,754,663 - PfGW456L13_4240 0.61 -0.4 4,754,663 - PfGW456L13_4240 0.61 -0.2 4,754,696 + PfGW456L13_4240 0.65 -0.5 4,754,696 + PfGW456L13_4240 0.65 -1.5 4,754,761 + PfGW456L13_4240 0.72 -0.6 4,754,761 + PfGW456L13_4240 0.72 -1.4 4,754,794 + PfGW456L13_4240 0.76 -0.8 4,754,794 + PfGW456L13_4240 0.76 -1.1 4,754,794 + PfGW456L13_4240 0.76 -1.2 4,754,795 - PfGW456L13_4240 0.76 -0.6 4,754,824 - PfGW456L13_4240 0.79 -0.6 4,755,053 + +0.1 4,755,053 + +1.7 4,755,053 + +0.3 4,755,103 - PfGW456L13_4241 0.14 -0.1
Or see this region's nucleotide sequence