Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4239

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4238 and PfGW456L13_4239 overlap by 4 nucleotidesPfGW456L13_4239 and PfGW456L13_4240 overlap by 8 nucleotidesPfGW456L13_4240 and PfGW456L13_4241 overlap by 4 nucleotides PfGW456L13_4238 - Cobyric acid synthase (EC 6.3.5.10), at 4,751,673 to 4,753,124 _4238 PfGW456L13_4239 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 4,753,121 to 4,754,113 _4239 PfGW456L13_4240 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 4,754,106 to 4,755,014 _4240 PfGW456L13_4241 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 4,755,011 to 4,755,661 _4241 Position (kb) 4753 4754 4755Strain fitness (log2 ratio) -3 -2 -1 0 1at 4752.251 kb on + strand, within PfGW456L13_4238at 4752.451 kb on + strand, within PfGW456L13_4238at 4752.600 kb on + strand, within PfGW456L13_4238at 4753.166 kb on + strandat 4753.792 kb on - strand, within PfGW456L13_4239at 4753.929 kb on + strand, within PfGW456L13_4239at 4754.063 kb on + strandat 4754.063 kb on + strandat 4754.063 kb on + strandat 4754.063 kb on + strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.064 kb on - strandat 4754.114 kb on - strandat 4754.148 kb on + strandat 4754.155 kb on - strandat 4754.389 kb on + strand, within PfGW456L13_4240at 4754.389 kb on + strand, within PfGW456L13_4240at 4754.389 kb on + strand, within PfGW456L13_4240at 4754.389 kb on + strand, within PfGW456L13_4240at 4754.390 kb on - strand, within PfGW456L13_4240at 4754.390 kb on - strand, within PfGW456L13_4240at 4754.390 kb on - strand, within PfGW456L13_4240at 4754.390 kb on - strand, within PfGW456L13_4240at 4754.390 kb on - strand, within PfGW456L13_4240at 4754.419 kb on + strand, within PfGW456L13_4240at 4754.419 kb on + strand, within PfGW456L13_4240at 4754.419 kb on + strand, within PfGW456L13_4240at 4754.419 kb on + strand, within PfGW456L13_4240at 4754.419 kb on + strand, within PfGW456L13_4240at 4754.420 kb on - strand, within PfGW456L13_4240at 4754.420 kb on - strand, within PfGW456L13_4240at 4754.420 kb on - strand, within PfGW456L13_4240at 4754.420 kb on - strand, within PfGW456L13_4240at 4754.420 kb on - strand, within PfGW456L13_4240at 4754.504 kb on + strand, within PfGW456L13_4240at 4754.505 kb on - strand, within PfGW456L13_4240at 4754.662 kb on + strand, within PfGW456L13_4240at 4754.662 kb on + strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.663 kb on - strand, within PfGW456L13_4240at 4754.696 kb on + strand, within PfGW456L13_4240at 4754.696 kb on + strand, within PfGW456L13_4240at 4754.761 kb on + strand, within PfGW456L13_4240at 4754.761 kb on + strand, within PfGW456L13_4240at 4754.794 kb on + strand, within PfGW456L13_4240at 4754.794 kb on + strand, within PfGW456L13_4240at 4754.794 kb on + strand, within PfGW456L13_4240at 4754.795 kb on - strand, within PfGW456L13_4240at 4754.824 kb on - strand, within PfGW456L13_4240at 4755.053 kb on + strandat 4755.053 kb on + strandat 4755.053 kb on + strandat 4755.103 kb on - strand, within PfGW456L13_4241

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,752,251 + PfGW456L13_4238 0.40 -2.0
4,752,451 + PfGW456L13_4238 0.54 -0.8
4,752,600 + PfGW456L13_4238 0.64 -1.2
4,753,166 + -1.4
4,753,792 - PfGW456L13_4239 0.68 -0.1
4,753,929 + PfGW456L13_4239 0.81 -1.0
4,754,063 + +0.2
4,754,063 + +0.9
4,754,063 + -2.0
4,754,063 + -0.1
4,754,064 - -0.4
4,754,064 - +0.0
4,754,064 - -1.0
4,754,064 - -0.5
4,754,064 - -0.6
4,754,064 - +0.2
4,754,064 - -1.4
4,754,064 - +0.0
4,754,064 - -0.5
4,754,064 - -0.7
4,754,114 - -0.9
4,754,148 + -1.7
4,754,155 - -0.9
4,754,389 + PfGW456L13_4240 0.31 +0.8
4,754,389 + PfGW456L13_4240 0.31 -2.2
4,754,389 + PfGW456L13_4240 0.31 -2.8
4,754,389 + PfGW456L13_4240 0.31 +0.5
4,754,390 - PfGW456L13_4240 0.31 -1.6
4,754,390 - PfGW456L13_4240 0.31 -3.7
4,754,390 - PfGW456L13_4240 0.31 +0.0
4,754,390 - PfGW456L13_4240 0.31 +0.6
4,754,390 - PfGW456L13_4240 0.31 -0.1
4,754,419 + PfGW456L13_4240 0.34 +0.4
4,754,419 + PfGW456L13_4240 0.34 -0.6
4,754,419 + PfGW456L13_4240 0.34 -0.8
4,754,419 + PfGW456L13_4240 0.34 -1.3
4,754,419 + PfGW456L13_4240 0.34 -0.9
4,754,420 - PfGW456L13_4240 0.35 -1.6
4,754,420 - PfGW456L13_4240 0.35 -1.5
4,754,420 - PfGW456L13_4240 0.35 -0.4
4,754,420 - PfGW456L13_4240 0.35 -0.1
4,754,420 - PfGW456L13_4240 0.35 +0.2
4,754,504 + PfGW456L13_4240 0.44 -0.6
4,754,505 - PfGW456L13_4240 0.44 +0.1
4,754,662 + PfGW456L13_4240 0.61 -0.0
4,754,662 + PfGW456L13_4240 0.61 -0.3
4,754,663 - PfGW456L13_4240 0.61 +0.2
4,754,663 - PfGW456L13_4240 0.61 -0.0
4,754,663 - PfGW456L13_4240 0.61 -1.3
4,754,663 - PfGW456L13_4240 0.61 +0.6
4,754,663 - PfGW456L13_4240 0.61 -0.4
4,754,663 - PfGW456L13_4240 0.61 -0.2
4,754,696 + PfGW456L13_4240 0.65 -0.5
4,754,696 + PfGW456L13_4240 0.65 -1.5
4,754,761 + PfGW456L13_4240 0.72 -0.6
4,754,761 + PfGW456L13_4240 0.72 -1.4
4,754,794 + PfGW456L13_4240 0.76 -0.8
4,754,794 + PfGW456L13_4240 0.76 -1.1
4,754,794 + PfGW456L13_4240 0.76 -1.2
4,754,795 - PfGW456L13_4240 0.76 -0.6
4,754,824 - PfGW456L13_4240 0.79 -0.6
4,755,053 + +0.1
4,755,053 + +1.7
4,755,053 + +0.3
4,755,103 - PfGW456L13_4241 0.14 -0.1

Or see this region's nucleotide sequence