Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4154

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4152 and PfGW456L13_4153 are separated by 365 nucleotidesPfGW456L13_4153 and PfGW456L13_4154 are separated by 210 nucleotidesPfGW456L13_4154 and PfGW456L13_4155 are separated by 216 nucleotides PfGW456L13_4152 - Protein containing domains DUF404, DUF407, at 4,668,779 to 4,670,188 _4152 PfGW456L13_4153 - Superfamily II DNA/RNA helicases, SNF2 family, at 4,670,554 to 4,670,898 _4153 PfGW456L13_4154 - FIG00957412: hypothetical protein, at 4,671,109 to 4,671,342 _4154 PfGW456L13_4155 - Spermidine synthase (EC 2.5.1.16), at 4,671,559 to 4,672,434 _4155 Position (kb) 4671 4672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4670.160 kb on + strandat 4670.160 kb on + strandat 4670.160 kb on + strandat 4670.160 kb on + strandat 4670.160 kb on + strandat 4670.161 kb on - strandat 4670.161 kb on - strandat 4670.161 kb on - strandat 4670.161 kb on - strandat 4670.161 kb on - strandat 4670.161 kb on - strandat 4670.175 kb on + strandat 4670.175 kb on + strandat 4670.175 kb on + strandat 4670.175 kb on + strandat 4670.176 kb on - strandat 4670.176 kb on - strandat 4670.176 kb on - strandat 4670.371 kb on + strandat 4670.372 kb on - strandat 4670.549 kb on + strandat 4670.550 kb on - strandat 4670.550 kb on - strandat 4670.550 kb on - strandat 4670.550 kb on - strandat 4670.550 kb on - strandat 4670.550 kb on - strandat 4670.572 kb on + strandat 4670.573 kb on - strandat 4670.573 kb on - strandat 4670.573 kb on - strandat 4670.663 kb on + strand, within PfGW456L13_4153at 4670.664 kb on - strand, within PfGW456L13_4153at 4670.664 kb on - strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.672 kb on + strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.673 kb on - strand, within PfGW456L13_4153at 4670.801 kb on + strand, within PfGW456L13_4153at 4670.802 kb on - strand, within PfGW456L13_4153at 4670.802 kb on - strand, within PfGW456L13_4153at 4670.886 kb on - strandat 4670.925 kb on - strandat 4671.022 kb on + strandat 4671.055 kb on - strandat 4671.316 kb on + strand, within PfGW456L13_4154at 4671.316 kb on + strand, within PfGW456L13_4154at 4671.316 kb on + strand, within PfGW456L13_4154at 4671.316 kb on + strand, within PfGW456L13_4154at 4671.317 kb on - strand, within PfGW456L13_4154at 4671.317 kb on - strand, within PfGW456L13_4154at 4671.317 kb on - strand, within PfGW456L13_4154at 4671.317 kb on - strand, within PfGW456L13_4154at 4671.358 kb on - strandat 4671.358 kb on - strandat 4671.376 kb on + strandat 4671.376 kb on + strandat 4671.376 kb on + strandat 4671.376 kb on + strandat 4671.377 kb on - strandat 4671.377 kb on - strandat 4671.382 kb on + strandat 4671.382 kb on + strandat 4671.382 kb on + strandat 4671.383 kb on - strandat 4671.383 kb on - strandat 4671.397 kb on - strandat 4671.443 kb on + strandat 4671.443 kb on + strandat 4671.484 kb on + strandat 4671.537 kb on + strandat 4671.567 kb on + strandat 4671.568 kb on - strandat 4671.568 kb on - strandat 4671.596 kb on + strandat 4671.596 kb on + strandat 4671.596 kb on + strandat 4671.596 kb on + strandat 4671.596 kb on + strandat 4671.597 kb on - strandat 4671.597 kb on - strandat 4671.597 kb on - strandat 4671.597 kb on - strandat 4671.597 kb on - strandat 4671.597 kb on - strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.638 kb on + strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.639 kb on - strandat 4671.752 kb on + strand, within PfGW456L13_4155at 4671.752 kb on + strand, within PfGW456L13_4155at 4671.753 kb on - strand, within PfGW456L13_4155at 4671.753 kb on - strand, within PfGW456L13_4155at 4671.773 kb on + strand, within PfGW456L13_4155at 4671.773 kb on + strand, within PfGW456L13_4155at 4671.773 kb on + strand, within PfGW456L13_4155at 4671.773 kb on + strand, within PfGW456L13_4155at 4671.905 kb on + strand, within PfGW456L13_4155at 4671.905 kb on + strandat 4671.906 kb on - strand, within PfGW456L13_4155at 4671.906 kb on - strand, within PfGW456L13_4155at 4672.242 kb on - strand, within PfGW456L13_4155at 4672.242 kb on - strand, within PfGW456L13_4155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,670,160 + -0.1
4,670,160 + -0.4
4,670,160 + -0.2
4,670,160 + -0.2
4,670,160 + -0.2
4,670,161 - -0.5
4,670,161 - -0.2
4,670,161 - +1.3
4,670,161 - -0.3
4,670,161 - -0.1
4,670,161 - -0.3
4,670,175 + -0.3
4,670,175 + -0.2
4,670,175 + +0.3
4,670,175 + +0.3
4,670,176 - +1.9
4,670,176 - +0.5
4,670,176 - -0.4
4,670,371 + +0.4
4,670,372 - -0.0
4,670,549 + -0.5
4,670,550 - -0.7
4,670,550 - -1.5
4,670,550 - -0.1
4,670,550 - -0.2
4,670,550 - +0.8
4,670,550 - +1.4
4,670,572 + -0.2
4,670,573 - +1.2
4,670,573 - +1.5
4,670,573 - +1.0
4,670,663 + PfGW456L13_4153 0.32 -0.7
4,670,664 - PfGW456L13_4153 0.32 -0.6
4,670,664 - PfGW456L13_4153 0.32 -1.9
4,670,672 + PfGW456L13_4153 0.34 +1.8
4,670,672 + PfGW456L13_4153 0.34 -1.8
4,670,672 + PfGW456L13_4153 0.34 -1.0
4,670,672 + PfGW456L13_4153 0.34 +0.2
4,670,672 + PfGW456L13_4153 0.34 +0.4
4,670,672 + PfGW456L13_4153 0.34 -1.0
4,670,672 + PfGW456L13_4153 0.34 -1.5
4,670,672 + PfGW456L13_4153 0.34 -0.1
4,670,672 + PfGW456L13_4153 0.34 +1.7
4,670,672 + PfGW456L13_4153 0.34 -0.1
4,670,673 - PfGW456L13_4153 0.34 -0.1
4,670,673 - PfGW456L13_4153 0.34 +0.3
4,670,673 - PfGW456L13_4153 0.34 -0.6
4,670,673 - PfGW456L13_4153 0.34 -0.9
4,670,673 - PfGW456L13_4153 0.34 -0.5
4,670,673 - PfGW456L13_4153 0.34 -2.5
4,670,673 - PfGW456L13_4153 0.34 +1.4
4,670,673 - PfGW456L13_4153 0.34 +1.1
4,670,673 - PfGW456L13_4153 0.34 -0.7
4,670,673 - PfGW456L13_4153 0.34 -3.5
4,670,673 - PfGW456L13_4153 0.34 -1.1
4,670,673 - PfGW456L13_4153 0.34 +0.2
4,670,673 - PfGW456L13_4153 0.34 +0.7
4,670,673 - PfGW456L13_4153 0.34 +0.7
4,670,673 - PfGW456L13_4153 0.34 -1.3
4,670,801 + PfGW456L13_4153 0.72 +0.0
4,670,802 - PfGW456L13_4153 0.72 +0.5
4,670,802 - PfGW456L13_4153 0.72 +1.3
4,670,886 - -0.1
4,670,925 - +0.0
4,671,022 + -0.9
4,671,055 - -2.2
4,671,316 + PfGW456L13_4154 0.88 +1.9
4,671,316 + PfGW456L13_4154 0.88 -0.6
4,671,316 + PfGW456L13_4154 0.88 +0.0
4,671,316 + PfGW456L13_4154 0.88 +0.4
4,671,317 - PfGW456L13_4154 0.89 -0.1
4,671,317 - PfGW456L13_4154 0.89 +0.7
4,671,317 - PfGW456L13_4154 0.89 +1.7
4,671,317 - PfGW456L13_4154 0.89 -0.4
4,671,358 - -0.3
4,671,358 - -0.1
4,671,376 + -0.4
4,671,376 + -0.1
4,671,376 + +0.0
4,671,376 + +0.3
4,671,377 - -1.1
4,671,377 - +0.5
4,671,382 + +0.6
4,671,382 + -0.1
4,671,382 + -0.8
4,671,383 - +2.0
4,671,383 - -2.2
4,671,397 - +0.5
4,671,443 + +1.4
4,671,443 + +0.5
4,671,484 + +0.2
4,671,537 + -1.3
4,671,567 + +0.5
4,671,568 - -1.0
4,671,568 - -1.5
4,671,596 + +0.5
4,671,596 + -0.3
4,671,596 + +0.5
4,671,596 + -0.7
4,671,596 + -1.2
4,671,597 - +1.0
4,671,597 - -0.4
4,671,597 - -0.4
4,671,597 - -0.3
4,671,597 - +1.0
4,671,597 - -0.9
4,671,638 + -2.2
4,671,638 + -0.0
4,671,638 + +1.0
4,671,638 + -0.3
4,671,638 + -1.1
4,671,638 + -0.1
4,671,638 + -1.0
4,671,638 + -0.5
4,671,638 + +2.3
4,671,638 + +0.5
4,671,639 - -0.6
4,671,639 - +0.8
4,671,639 - +0.6
4,671,639 - -0.4
4,671,639 - +1.5
4,671,639 - -0.4
4,671,639 - -0.2
4,671,639 - +0.4
4,671,752 + PfGW456L13_4155 0.22 -1.0
4,671,752 + PfGW456L13_4155 0.22 -0.6
4,671,753 - PfGW456L13_4155 0.22 +0.6
4,671,753 - PfGW456L13_4155 0.22 -0.7
4,671,773 + PfGW456L13_4155 0.24 -0.1
4,671,773 + PfGW456L13_4155 0.24 -1.2
4,671,773 + PfGW456L13_4155 0.24 +0.5
4,671,773 + PfGW456L13_4155 0.24 -0.1
4,671,905 + PfGW456L13_4155 0.39 +1.2
4,671,905 + +0.7
4,671,906 - PfGW456L13_4155 0.40 +0.1
4,671,906 - PfGW456L13_4155 0.40 -0.1
4,672,242 - PfGW456L13_4155 0.78 -0.5
4,672,242 - PfGW456L13_4155 0.78 -0.9

Or see this region's nucleotide sequence