Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1478 and PfGW456L13_1479 overlap by 8 nucleotides PfGW456L13_1479 and PfGW456L13_1480 are separated by 168 nucleotides PfGW456L13_1480 and PfGW456L13_1481 overlap by 32 nucleotides PfGW456L13_1481 and PfGW456L13_1482 are separated by 130 nucleotides
PfGW456L13_1478 - Lipoprotein signal peptidase (EC 3.4.23.36), at 1,632,442 to 1,632,909
_1478
PfGW456L13_1479 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 1,632,902 to 1,633,354
_1479
PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470
_1480
PfGW456L13_1481 - Type IV fimbrial biogenesis protein FimT, at 1,634,439 to 1,634,978
_1481
PfGW456L13_1482 - type 4 fimbrial biogenesis protein FimU, at 1,635,109 to 1,635,582
_1482
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1632.867 kb on + strand at 1632.915 kb on + strand at 1632.915 kb on + strand at 1632.915 kb on + strand at 1633.231 kb on + strand, within PfGW456L13_1479 at 1633.326 kb on + strand at 1633.326 kb on + strand at 1633.326 kb on + strand at 1633.326 kb on + strand at 1633.352 kb on + strand at 1633.352 kb on + strand at 1633.352 kb on + strand at 1633.417 kb on + strand at 1633.431 kb on + strand at 1633.431 kb on + strand at 1633.437 kb on + strand at 1633.437 kb on + strand at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.587 kb on + strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.588 kb on - strand, within PfGW456L13_1481 at 1634.589 kb on + strand, within PfGW456L13_1481 at 1634.590 kb on - strand, within PfGW456L13_1481 at 1634.590 kb on - strand, within PfGW456L13_1481 at 1634.590 kb on - strand, within PfGW456L13_1481 at 1634.631 kb on + strand, within PfGW456L13_1481 at 1634.631 kb on + strand, within PfGW456L13_1481 at 1634.631 kb on + strand, within PfGW456L13_1481 at 1634.835 kb on - strand, within PfGW456L13_1481 at 1634.835 kb on - strand, within PfGW456L13_1481 at 1634.927 kb on + strand at 1634.928 kb on - strand at 1634.967 kb on + strand at 1634.968 kb on - strand at 1634.968 kb on - strand at 1634.968 kb on - strand at 1634.968 kb on - strand at 1634.968 kb on - strand at 1634.968 kb on - strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.082 kb on + strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.083 kb on - strand at 1635.084 kb on + strand at 1635.084 kb on + strand at 1635.084 kb on + strand at 1635.085 kb on - strand at 1635.120 kb on + strand at 1635.120 kb on + strand at 1635.120 kb on + strand at 1635.121 kb on - strand at 1635.121 kb on - strand at 1635.121 kb on - strand at 1635.121 kb on - strand at 1635.121 kb on - strand at 1635.355 kb on + strand, within PfGW456L13_1482 at 1635.363 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.383 kb on + strand, within PfGW456L13_1482 at 1635.384 kb on - strand, within PfGW456L13_1482 at 1635.384 kb on - strand, within PfGW456L13_1482
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,632,867 + +0.7 1,632,915 + +0.4 1,632,915 + +0.3 1,632,915 + -1.3 1,633,231 + PfGW456L13_1479 0.73 +0.3 1,633,326 + -0.8 1,633,326 + +1.4 1,633,326 + +0.2 1,633,326 + -0.0 1,633,352 + +0.6 1,633,352 + -0.8 1,633,352 + +0.8 1,633,417 + -1.7 1,633,431 + -1.3 1,633,431 + +1.0 1,633,437 + -1.1 1,633,437 + -0.6 1,634,587 + PfGW456L13_1481 0.27 +1.3 1,634,587 + PfGW456L13_1481 0.27 +0.3 1,634,587 + PfGW456L13_1481 0.27 -3.7 1,634,587 + PfGW456L13_1481 0.27 +0.3 1,634,587 + PfGW456L13_1481 0.27 -2.1 1,634,587 + PfGW456L13_1481 0.27 +0.5 1,634,588 - PfGW456L13_1481 0.28 +1.0 1,634,588 - PfGW456L13_1481 0.28 +0.3 1,634,588 - PfGW456L13_1481 0.28 +0.4 1,634,588 - PfGW456L13_1481 0.28 +1.0 1,634,588 - PfGW456L13_1481 0.28 -2.4 1,634,588 - PfGW456L13_1481 0.28 +2.2 1,634,588 - PfGW456L13_1481 0.28 -0.1 1,634,589 + PfGW456L13_1481 0.28 -0.4 1,634,590 - PfGW456L13_1481 0.28 +0.2 1,634,590 - PfGW456L13_1481 0.28 +0.2 1,634,590 - PfGW456L13_1481 0.28 -0.3 1,634,631 + PfGW456L13_1481 0.36 -0.4 1,634,631 + PfGW456L13_1481 0.36 +1.3 1,634,631 + PfGW456L13_1481 0.36 +0.5 1,634,835 - PfGW456L13_1481 0.73 +0.1 1,634,835 - PfGW456L13_1481 0.73 +1.8 1,634,927 + +0.9 1,634,928 - -0.2 1,634,967 + +0.1 1,634,968 - +1.0 1,634,968 - +1.1 1,634,968 - +0.2 1,634,968 - +0.9 1,634,968 - -0.8 1,634,968 - +0.9 1,635,082 + +0.0 1,635,082 + +1.0 1,635,082 + -0.5 1,635,082 + -1.3 1,635,082 + -0.7 1,635,082 + +0.1 1,635,082 + -0.6 1,635,082 + -0.4 1,635,082 + +0.5 1,635,082 + -0.8 1,635,083 - +0.5 1,635,083 - +0.9 1,635,083 - +0.8 1,635,083 - +1.1 1,635,083 - -0.2 1,635,083 - -1.7 1,635,083 - +0.3 1,635,084 + -0.2 1,635,084 + +0.3 1,635,084 + +0.8 1,635,085 - +0.7 1,635,120 + +0.7 1,635,120 + -0.7 1,635,120 + +0.1 1,635,121 - -0.1 1,635,121 - +0.0 1,635,121 - +0.3 1,635,121 - +0.5 1,635,121 - -0.5 1,635,355 + PfGW456L13_1482 0.52 -1.1 1,635,363 + PfGW456L13_1482 0.54 +0.3 1,635,383 + PfGW456L13_1482 0.58 +0.1 1,635,383 + PfGW456L13_1482 0.58 -0.3 1,635,383 + PfGW456L13_1482 0.58 +2.1 1,635,383 + PfGW456L13_1482 0.58 -0.4 1,635,383 + PfGW456L13_1482 0.58 -1.1 1,635,383 + PfGW456L13_1482 0.58 +0.4 1,635,384 - PfGW456L13_1482 0.58 -0.2 1,635,384 - PfGW456L13_1482 0.58 -0.2
Or see this region's nucleotide sequence