Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_132 and PfGW456L13_133 are separated by 68 nucleotides PfGW456L13_133 and PfGW456L13_134 are separated by 224 nucleotides PfGW456L13_134 and PfGW456L13_135 overlap by 1 nucleotides
PfGW456L13_132 - Lysine decarboxylase family, at 148,722 to 149,309
_132
PfGW456L13_133 - FIG00956548: hypothetical protein, at 149,378 to 149,557
_133
PfGW456L13_134 - Protein containing transglutaminase-like domain, putative cysteine protease, at 149,782 to 150,672
_134
PfGW456L13_135 - Protein containing domains DUF404, DUF407, DUF403, at 150,672 to 153,158
_135
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 148.839 kb on + strand, within PfGW456L13_132 at 148.839 kb on + strand, within PfGW456L13_132 at 148.839 kb on + strand, within PfGW456L13_132 at 148.839 kb on + strand, within PfGW456L13_132 at 148.839 kb on + strand, within PfGW456L13_132 at 148.840 kb on - strand, within PfGW456L13_132 at 148.840 kb on - strand, within PfGW456L13_132 at 148.840 kb on - strand, within PfGW456L13_132 at 148.840 kb on - strand, within PfGW456L13_132 at 149.142 kb on + strand, within PfGW456L13_132 at 149.143 kb on - strand, within PfGW456L13_132 at 149.276 kb on - strand at 149.336 kb on + strand at 149.336 kb on + strand at 149.336 kb on + strand at 149.337 kb on - strand at 149.389 kb on + strand at 149.389 kb on + strand at 149.390 kb on - strand at 149.390 kb on - strand at 149.390 kb on - strand at 149.390 kb on - strand at 149.390 kb on - strand at 149.390 kb on - strand at 149.393 kb on + strand at 149.393 kb on + strand at 149.393 kb on + strand at 149.394 kb on - strand at 149.394 kb on - strand at 149.394 kb on - strand at 149.394 kb on - strand at 149.467 kb on + strand, within PfGW456L13_133 at 149.467 kb on + strand, within PfGW456L13_133 at 149.467 kb on + strand, within PfGW456L13_133 at 149.468 kb on - strand, within PfGW456L13_133 at 149.468 kb on - strand, within PfGW456L13_133 at 149.734 kb on + strand at 149.734 kb on + strand at 150.047 kb on + strand, within PfGW456L13_134 at 150.047 kb on + strand, within PfGW456L13_134 at 150.048 kb on - strand, within PfGW456L13_134 at 150.048 kb on - strand, within PfGW456L13_134 at 150.073 kb on + strand, within PfGW456L13_134 at 150.074 kb on - strand, within PfGW456L13_134 at 150.074 kb on - strand, within PfGW456L13_134 at 150.074 kb on - strand, within PfGW456L13_134 at 150.136 kb on + strand, within PfGW456L13_134 at 150.136 kb on + strand, within PfGW456L13_134 at 150.136 kb on + strand at 150.137 kb on - strand, within PfGW456L13_134 at 150.177 kb on + strand, within PfGW456L13_134 at 150.178 kb on - strand, within PfGW456L13_134 at 150.178 kb on - strand, within PfGW456L13_134 at 150.277 kb on + strand, within PfGW456L13_134 at 150.277 kb on + strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.278 kb on - strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.287 kb on + strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.288 kb on - strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.350 kb on + strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.351 kb on - strand, within PfGW456L13_134 at 150.418 kb on + strand, within PfGW456L13_134 at 150.419 kb on - strand, within PfGW456L13_134 at 150.419 kb on - strand, within PfGW456L13_134 at 150.629 kb on + strand at 150.630 kb on - strand at 150.635 kb on + strand at 150.987 kb on + strand, within PfGW456L13_135 at 150.988 kb on - strand, within PfGW456L13_135 at 150.988 kb on - strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.039 kb on + strand, within PfGW456L13_135 at 151.040 kb on - strand, within PfGW456L13_135 at 151.040 kb on - strand, within PfGW456L13_135 at 151.537 kb on + strand, within PfGW456L13_135 at 151.591 kb on + strand, within PfGW456L13_135 at 151.636 kb on + strand, within PfGW456L13_135
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 148,839 + PfGW456L13_132 0.20 +0.4 148,839 + PfGW456L13_132 0.20 -0.8 148,839 + PfGW456L13_132 0.20 +0.1 148,839 + PfGW456L13_132 0.20 +1.2 148,839 + PfGW456L13_132 0.20 -0.5 148,840 - PfGW456L13_132 0.20 +1.2 148,840 - PfGW456L13_132 0.20 +1.0 148,840 - PfGW456L13_132 0.20 +0.7 148,840 - PfGW456L13_132 0.20 +2.0 149,142 + PfGW456L13_132 0.71 +1.1 149,143 - PfGW456L13_132 0.72 -1.0 149,276 - +0.2 149,336 + -0.8 149,336 + -0.2 149,336 + +0.7 149,337 - +0.5 149,389 + -1.2 149,389 + +0.1 149,390 - -0.7 149,390 - +0.2 149,390 - +0.5 149,390 - -0.8 149,390 - +0.3 149,390 - -1.0 149,393 + +0.0 149,393 + +0.4 149,393 + +0.8 149,394 - -0.8 149,394 - -0.0 149,394 - +0.9 149,394 - +0.2 149,467 + PfGW456L13_133 0.49 -0.2 149,467 + PfGW456L13_133 0.49 -0.7 149,467 + PfGW456L13_133 0.49 +0.1 149,468 - PfGW456L13_133 0.50 -1.7 149,468 - PfGW456L13_133 0.50 -0.6 149,734 + -0.4 149,734 + +0.5 150,047 + PfGW456L13_134 0.30 -1.7 150,047 + PfGW456L13_134 0.30 -0.4 150,048 - PfGW456L13_134 0.30 +0.4 150,048 - PfGW456L13_134 0.30 +0.5 150,073 + PfGW456L13_134 0.33 +0.7 150,074 - PfGW456L13_134 0.33 -1.3 150,074 - PfGW456L13_134 0.33 +0.5 150,074 - PfGW456L13_134 0.33 -1.4 150,136 + PfGW456L13_134 0.40 +0.2 150,136 + PfGW456L13_134 0.40 -0.6 150,136 + +3.2 150,137 - PfGW456L13_134 0.40 -0.6 150,177 + PfGW456L13_134 0.44 +0.7 150,178 - PfGW456L13_134 0.44 -1.4 150,178 - PfGW456L13_134 0.44 -0.7 150,277 + PfGW456L13_134 0.56 +0.3 150,277 + PfGW456L13_134 0.56 +0.1 150,278 - PfGW456L13_134 0.56 -1.4 150,278 - PfGW456L13_134 0.56 +0.9 150,278 - PfGW456L13_134 0.56 -0.4 150,278 - PfGW456L13_134 0.56 +1.1 150,278 - PfGW456L13_134 0.56 -0.7 150,278 - PfGW456L13_134 0.56 -1.9 150,278 - PfGW456L13_134 0.56 +0.3 150,287 + PfGW456L13_134 0.57 -1.7 150,287 + PfGW456L13_134 0.57 +0.3 150,287 + PfGW456L13_134 0.57 -0.9 150,287 + PfGW456L13_134 0.57 -1.2 150,287 + PfGW456L13_134 0.57 +0.4 150,287 + PfGW456L13_134 0.57 +0.0 150,287 + PfGW456L13_134 0.57 -3.6 150,287 + PfGW456L13_134 0.57 -2.6 150,287 + PfGW456L13_134 0.57 -1.0 150,287 + PfGW456L13_134 0.57 -1.4 150,288 - PfGW456L13_134 0.57 -0.5 150,288 - PfGW456L13_134 0.57 -0.5 150,288 - PfGW456L13_134 0.57 -0.7 150,288 - PfGW456L13_134 0.57 -0.4 150,288 - PfGW456L13_134 0.57 -0.3 150,288 - PfGW456L13_134 0.57 -0.7 150,288 - PfGW456L13_134 0.57 -0.2 150,288 - PfGW456L13_134 0.57 -0.6 150,288 - PfGW456L13_134 0.57 +0.3 150,288 - PfGW456L13_134 0.57 +0.2 150,350 + PfGW456L13_134 0.64 +0.1 150,350 + PfGW456L13_134 0.64 -0.6 150,350 + PfGW456L13_134 0.64 -0.7 150,350 + PfGW456L13_134 0.64 -0.3 150,350 + PfGW456L13_134 0.64 +0.8 150,350 + PfGW456L13_134 0.64 -0.7 150,351 - PfGW456L13_134 0.64 -0.3 150,351 - PfGW456L13_134 0.64 +1.1 150,351 - PfGW456L13_134 0.64 +0.1 150,351 - PfGW456L13_134 0.64 +0.6 150,351 - PfGW456L13_134 0.64 +0.3 150,351 - PfGW456L13_134 0.64 -0.4 150,351 - PfGW456L13_134 0.64 -1.3 150,418 + PfGW456L13_134 0.71 +0.1 150,419 - PfGW456L13_134 0.71 -0.0 150,419 - PfGW456L13_134 0.71 -0.4 150,629 + -1.2 150,630 - -0.2 150,635 + +0.2 150,987 + PfGW456L13_135 0.13 -0.0 150,988 - PfGW456L13_135 0.13 -0.1 150,988 - PfGW456L13_135 0.13 -0.3 151,039 + PfGW456L13_135 0.15 -1.6 151,039 + PfGW456L13_135 0.15 -0.2 151,039 + PfGW456L13_135 0.15 -0.2 151,039 + PfGW456L13_135 0.15 -0.1 151,039 + PfGW456L13_135 0.15 -1.4 151,039 + PfGW456L13_135 0.15 -1.7 151,040 - PfGW456L13_135 0.15 +0.2 151,040 - PfGW456L13_135 0.15 -0.7 151,537 + PfGW456L13_135 0.35 -0.0 151,591 + PfGW456L13_135 0.37 -0.2 151,636 + PfGW456L13_135 0.39 +0.1
Or see this region's nucleotide sequence