Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2000

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1998 and B158DRAFT_1999 are separated by 8 nucleotidesB158DRAFT_1999 and B158DRAFT_2000 are separated by 2 nucleotidesB158DRAFT_2000 and B158DRAFT_2001 are separated by 24 nucleotidesB158DRAFT_2001 and B158DRAFT_2002 are separated by 137 nucleotides B158DRAFT_1998: B158DRAFT_1998 - Transcriptional regulators, at 134,303 to 134,773 _1998 B158DRAFT_1999: B158DRAFT_1999 - prepilin-type N-terminal cleavage/methylation domain, at 134,782 to 135,261 _1999 B158DRAFT_2000: B158DRAFT_2000 - Type II secretory pathway, component PulF, at 135,264 to 136,244 _2000 B158DRAFT_2001: B158DRAFT_2001 - hypothetical protein, at 136,269 to 136,850 _2001 B158DRAFT_2002: B158DRAFT_2002 - ribosomal protein S6, at 136,988 to 137,386 _2002 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 134.369 kb on + strand, within B158DRAFT_1998at 134.377 kb on - strand, within B158DRAFT_1998at 134.377 kb on - strand, within B158DRAFT_1998at 134.507 kb on - strand, within B158DRAFT_1998at 134.612 kb on + strand, within B158DRAFT_1998at 134.620 kb on - strand, within B158DRAFT_1998at 134.620 kb on - strand, within B158DRAFT_1998at 134.632 kb on - strand, within B158DRAFT_1998at 134.822 kb on + strandat 134.849 kb on + strand, within B158DRAFT_1999at 134.850 kb on - strand, within B158DRAFT_1999at 134.850 kb on - strand, within B158DRAFT_1999at 134.883 kb on + strand, within B158DRAFT_1999at 134.891 kb on - strand, within B158DRAFT_1999at 134.926 kb on + strand, within B158DRAFT_1999at 134.927 kb on + strand, within B158DRAFT_1999at 134.934 kb on - strand, within B158DRAFT_1999at 134.935 kb on - strand, within B158DRAFT_1999at 134.940 kb on - strand, within B158DRAFT_1999at 134.960 kb on + strand, within B158DRAFT_1999at 134.968 kb on - strand, within B158DRAFT_1999at 134.970 kb on + strand, within B158DRAFT_1999at 135.027 kb on - strand, within B158DRAFT_1999at 135.030 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.042 kb on - strand, within B158DRAFT_1999at 135.042 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.106 kb on + strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.116 kb on + strand, within B158DRAFT_1999at 135.121 kb on + strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.158 kb on + strand, within B158DRAFT_1999at 135.166 kb on - strand, within B158DRAFT_1999at 135.166 kb on - strand, within B158DRAFT_1999at 135.224 kb on + strandat 135.227 kb on - strandat 135.242 kb on - strandat 135.242 kb on - strandat 135.243 kb on + strandat 135.336 kb on - strandat 135.383 kb on + strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.517 kb on - strand, within B158DRAFT_2000at 135.564 kb on - strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.621 kb on - strand, within B158DRAFT_2000at 135.651 kb on - strand, within B158DRAFT_2000at 135.679 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000at 135.778 kb on - strand, within B158DRAFT_2000at 135.779 kb on - strand, within B158DRAFT_2000at 135.788 kb on + strand, within B158DRAFT_2000at 135.837 kb on - strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.842 kb on + strand, within B158DRAFT_2000at 135.850 kb on - strand, within B158DRAFT_2000at 135.899 kb on - strand, within B158DRAFT_2000at 135.928 kb on - strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.973 kb on + strand, within B158DRAFT_2000at 135.976 kb on - strand, within B158DRAFT_2000at 135.978 kb on + strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.981 kb on - strand, within B158DRAFT_2000at 135.996 kb on - strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 135.998 kb on + strand, within B158DRAFT_2000at 136.005 kb on + strand, within B158DRAFT_2000at 136.010 kb on + strand, within B158DRAFT_2000at 136.076 kb on + strand, within B158DRAFT_2000at 136.076 kb on + strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.084 kb on - strand, within B158DRAFT_2000at 136.091 kb on - strand, within B158DRAFT_2000at 136.133 kb on + strand, within B158DRAFT_2000at 136.171 kb on + strandat 136.179 kb on - strandat 136.179 kb on - strandat 136.186 kb on + strandat 136.339 kb on + strand, within B158DRAFT_2001at 136.349 kb on + strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.357 kb on - strand, within B158DRAFT_2001at 136.364 kb on - strand, within B158DRAFT_2001at 136.368 kb on + strand, within B158DRAFT_2001at 136.376 kb on - strand, within B158DRAFT_2001at 136.397 kb on + strand, within B158DRAFT_2001at 136.466 kb on - strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.571 kb on + strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.579 kb on - strand, within B158DRAFT_2001at 136.629 kb on + strand, within B158DRAFT_2001at 136.662 kb on + strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.705 kb on - strand, within B158DRAFT_2001at 136.728 kb on - strand, within B158DRAFT_2001at 136.838 kb on - strandat 136.840 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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134,369 + B158DRAFT_1998 0.14 +0.5
134,377 - B158DRAFT_1998 0.16 -0.4
134,377 - B158DRAFT_1998 0.16 -0.1
134,507 - B158DRAFT_1998 0.43 +1.0
134,612 + B158DRAFT_1998 0.66 +2.9
134,620 - B158DRAFT_1998 0.67 +1.2
134,620 - B158DRAFT_1998 0.67 +1.4
134,632 - B158DRAFT_1998 0.70 +0.9
134,822 + -0.1
134,849 + B158DRAFT_1999 0.14 -0.2
134,850 - B158DRAFT_1999 0.14 -0.6
134,850 - B158DRAFT_1999 0.14 -0.1
134,883 + B158DRAFT_1999 0.21 -0.9
134,891 - B158DRAFT_1999 0.23 -0.0
134,926 + B158DRAFT_1999 0.30 +0.2
134,927 + B158DRAFT_1999 0.30 -0.5
134,934 - B158DRAFT_1999 0.32 -0.1
134,935 - B158DRAFT_1999 0.32 -0.9
134,940 - B158DRAFT_1999 0.33 -0.6
134,960 + B158DRAFT_1999 0.37 -0.5
134,968 - B158DRAFT_1999 0.39 -0.2
134,970 + B158DRAFT_1999 0.39 +0.3
135,027 - B158DRAFT_1999 0.51 -0.2
135,030 + B158DRAFT_1999 0.52 +0.9
135,035 + B158DRAFT_1999 0.53 -0.3
135,035 + B158DRAFT_1999 0.53 -0.2
135,035 + B158DRAFT_1999 0.53 -0.2
135,042 - B158DRAFT_1999 0.54 -0.4
135,042 - B158DRAFT_1999 0.54 -0.2
135,043 - B158DRAFT_1999 0.54 -0.1
135,043 - B158DRAFT_1999 0.54 -0.3
135,043 - B158DRAFT_1999 0.54 -0.6
135,043 - B158DRAFT_1999 0.54 -0.4
135,106 + B158DRAFT_1999 0.68 -1.2
135,114 - B158DRAFT_1999 0.69 -0.3
135,114 - B158DRAFT_1999 0.69 -0.4
135,114 - B158DRAFT_1999 0.69 -1.2
135,114 - B158DRAFT_1999 0.69 -0.7
135,116 + B158DRAFT_1999 0.70 -0.8
135,121 + B158DRAFT_1999 0.71 -0.5
135,129 - B158DRAFT_1999 0.72 -1.6
135,129 - B158DRAFT_1999 0.72 -0.5
135,129 - B158DRAFT_1999 0.72 -0.3
135,158 + B158DRAFT_1999 0.78 -0.3
135,166 - B158DRAFT_1999 0.80 +0.1
135,166 - B158DRAFT_1999 0.80 -0.5
135,224 + -0.2
135,227 - -0.5
135,242 - -0.6
135,242 - -0.1
135,243 + -0.2
135,336 - -0.5
135,383 + B158DRAFT_2000 0.12 -0.3
135,419 - B158DRAFT_2000 0.16 +0.3
135,419 - B158DRAFT_2000 0.16 -0.1
135,438 + B158DRAFT_2000 0.18 -0.4
135,438 + B158DRAFT_2000 0.18 -1.0
135,438 + B158DRAFT_2000 0.18 -0.1
135,446 - B158DRAFT_2000 0.19 -0.2
135,446 - B158DRAFT_2000 0.19 -0.5
135,446 - B158DRAFT_2000 0.19 -1.1
135,446 - B158DRAFT_2000 0.19 -0.7
135,446 - B158DRAFT_2000 0.19 -1.0
135,446 - B158DRAFT_2000 0.19 -0.3
135,517 - B158DRAFT_2000 0.26 -0.9
135,564 - B158DRAFT_2000 0.31 -0.1
135,613 + B158DRAFT_2000 0.36 +1.1
135,613 + B158DRAFT_2000 0.36 -0.2
135,621 - B158DRAFT_2000 0.36 +0.2
135,651 - B158DRAFT_2000 0.39 -0.4
135,679 - B158DRAFT_2000 0.42 -0.4
135,681 - B158DRAFT_2000 0.43 -0.2
135,681 - B158DRAFT_2000 0.43 -0.4
135,681 - B158DRAFT_2000 0.43 -0.6
135,703 + B158DRAFT_2000 0.45 -0.8
135,703 + B158DRAFT_2000 0.45 -0.6
135,778 - B158DRAFT_2000 0.52 -1.5
135,779 - B158DRAFT_2000 0.52 -1.6
135,788 + B158DRAFT_2000 0.53 -0.9
135,837 - B158DRAFT_2000 0.58 -0.4
135,842 + B158DRAFT_2000 0.59 -0.6
135,842 + B158DRAFT_2000 0.59 -0.0
135,842 + B158DRAFT_2000 0.59 -0.7
135,850 - B158DRAFT_2000 0.60 -0.9
135,899 - B158DRAFT_2000 0.65 +0.4
135,928 - B158DRAFT_2000 0.68 -0.6
135,973 + B158DRAFT_2000 0.72 -0.4
135,973 + B158DRAFT_2000 0.72 -0.4
135,973 + B158DRAFT_2000 0.72 -0.7
135,976 - B158DRAFT_2000 0.73 -1.0
135,978 + B158DRAFT_2000 0.73 -1.6
135,981 - B158DRAFT_2000 0.73 -0.9
135,981 - B158DRAFT_2000 0.73 -0.9
135,981 - B158DRAFT_2000 0.73 -0.4
135,981 - B158DRAFT_2000 0.73 -0.3
135,981 - B158DRAFT_2000 0.73 -0.1
135,996 - B158DRAFT_2000 0.75 -0.3
135,998 + B158DRAFT_2000 0.75 -0.3
135,998 + B158DRAFT_2000 0.75 -2.5
135,998 + B158DRAFT_2000 0.75 -0.4
135,998 + B158DRAFT_2000 0.75 -0.7
136,005 + B158DRAFT_2000 0.76 -0.9
136,010 + B158DRAFT_2000 0.76 +2.2
136,076 + B158DRAFT_2000 0.83 -0.5
136,076 + B158DRAFT_2000 0.83 +0.3
136,084 - B158DRAFT_2000 0.84 -0.3
136,084 - B158DRAFT_2000 0.84 -0.8
136,084 - B158DRAFT_2000 0.84 -0.3
136,084 - B158DRAFT_2000 0.84 -0.5
136,084 - B158DRAFT_2000 0.84 -0.3
136,091 - B158DRAFT_2000 0.84 -0.6
136,133 + B158DRAFT_2000 0.89 -0.7
136,171 + -0.7
136,179 - -0.3
136,179 - -1.1
136,186 + -0.1
136,339 + B158DRAFT_2001 0.12 -1.2
136,349 + B158DRAFT_2001 0.14 -0.6
136,357 - B158DRAFT_2001 0.15 -0.6
136,357 - B158DRAFT_2001 0.15 -0.3
136,357 - B158DRAFT_2001 0.15 -0.4
136,364 - B158DRAFT_2001 0.16 +0.3
136,368 + B158DRAFT_2001 0.17 -0.2
136,376 - B158DRAFT_2001 0.18 -0.3
136,397 + B158DRAFT_2001 0.22 +1.7
136,466 - B158DRAFT_2001 0.34 -0.1
136,571 + B158DRAFT_2001 0.52 -0.1
136,571 + B158DRAFT_2001 0.52 -0.4
136,571 + B158DRAFT_2001 0.52 -0.4
136,571 + B158DRAFT_2001 0.52 -0.5
136,571 + B158DRAFT_2001 0.52 -0.3
136,571 + B158DRAFT_2001 0.52 -0.6
136,571 + B158DRAFT_2001 0.52 -1.8
136,579 - B158DRAFT_2001 0.53 -0.0
136,579 - B158DRAFT_2001 0.53 -0.3
136,579 - B158DRAFT_2001 0.53 -0.3
136,629 + B158DRAFT_2001 0.62 -0.8
136,662 + B158DRAFT_2001 0.68 -0.2
136,705 - B158DRAFT_2001 0.75 -0.5
136,705 - B158DRAFT_2001 0.75 -0.2
136,728 - B158DRAFT_2001 0.79 -0.6
136,838 - -0.2
136,840 + -0.8

Or see this region's nucleotide sequence