Strain Fitness in Agrobacterium fabrum C58 around Atu6171

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6170 and Atu6171 are separated by 16 nucleotidesAtu6171 and Atu6172 are separated by 100 nucleotides Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674 Atu6170 Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353 Atu6171 Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341 Atu6172 Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 186.691 kb on - strand, within Atu6170at 186.711 kb on - strand, within Atu6170at 186.718 kb on - strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.756 kb on + strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.764 kb on - strand, within Atu6170at 186.798 kb on + strand, within Atu6170at 186.849 kb on + strand, within Atu6170at 186.880 kb on - strand, within Atu6170at 186.908 kb on - strand, within Atu6170at 186.929 kb on - strand, within Atu6170at 186.975 kb on + strand, within Atu6170at 186.992 kb on - strand, within Atu6170at 187.006 kb on + strand, within Atu6170at 187.006 kb on - strand, within Atu6170at 187.014 kb on - strand, within Atu6170at 187.014 kb on - strand, within Atu6170at 187.014 kb on - strand, within Atu6170at 187.014 kb on - strand, within Atu6170at 187.030 kb on + strand, within Atu6170at 187.030 kb on + strand, within Atu6170at 187.035 kb on + strand, within Atu6170at 187.038 kb on - strand, within Atu6170at 187.038 kb on - strand, within Atu6170at 187.038 kb on - strand, within Atu6170at 187.043 kb on - strand, within Atu6170at 187.144 kb on + strand, within Atu6170at 187.150 kb on + strand, within Atu6170at 187.150 kb on + strand, within Atu6170at 187.158 kb on - strand, within Atu6170at 187.182 kb on - strand, within Atu6170at 187.379 kb on - strand, within Atu6170at 187.405 kb on + strand, within Atu6170at 187.453 kb on + strandat 187.473 kb on - strandat 187.473 kb on - strandat 187.482 kb on - strandat 187.496 kb on - strandat 187.520 kb on + strandat 187.569 kb on + strandat 187.569 kb on + strandat 187.569 kb on + strandat 187.577 kb on - strandat 187.577 kb on - strandat 187.594 kb on - strandat 187.606 kb on + strandat 187.606 kb on + strandat 187.606 kb on + strandat 187.606 kb on + strandat 187.614 kb on - strandat 187.614 kb on - strandat 187.617 kb on + strandat 187.622 kb on + strandat 187.681 kb on - strandat 187.705 kb on + strandat 187.731 kb on + strandat 187.731 kb on + strandat 187.818 kb on - strand, within Atu6171at 187.839 kb on + strand, within Atu6171at 187.847 kb on - strand, within Atu6171at 187.847 kb on - strand, within Atu6171at 187.864 kb on - strand, within Atu6171at 187.892 kb on + strand, within Atu6171at 188.026 kb on - strand, within Atu6171at 188.036 kb on + strand, within Atu6171at 188.044 kb on - strand, within Atu6171at 188.095 kb on - strand, within Atu6171at 188.103 kb on - strand, within Atu6171at 188.136 kb on + strand, within Atu6171at 188.229 kb on + strand, within Atu6171at 188.269 kb on + strand, within Atu6171at 188.277 kb on - strand, within Atu6171at 188.305 kb on + strandat 188.334 kb on + strandat 188.348 kb on + strandat 188.356 kb on - strandat 188.356 kb on - strandat 188.374 kb on + strandat 188.379 kb on + strandat 188.444 kb on + strandat 188.452 kb on - strandat 188.452 kb on - strandat 188.485 kb on - strandat 188.528 kb on - strandat 188.542 kb on - strandat 188.548 kb on + strand, within Atu6172at 188.584 kb on + strand, within Atu6172at 188.586 kb on - strand, within Atu6172at 188.594 kb on - strand, within Atu6172at 188.598 kb on + strand, within Atu6172at 188.598 kb on + strand, within Atu6172at 188.607 kb on + strand, within Atu6172at 188.662 kb on - strand, within Atu6172at 188.699 kb on - strand, within Atu6172at 188.781 kb on + strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.799 kb on - strand, within Atu6172at 188.801 kb on + strand, within Atu6172at 188.809 kb on - strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.826 kb on - strand, within Atu6172at 188.898 kb on + strand, within Atu6172at 188.921 kb on + strand, within Atu6172at 188.981 kb on + strand, within Atu6172at 188.988 kb on + strand, within Atu6172at 189.003 kb on + strand, within Atu6172at 189.043 kb on + strand, within Atu6172at 189.061 kb on + strand, within Atu6172at 189.062 kb on - strand, within Atu6172at 189.069 kb on - strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.141 kb on - strand, within Atu6172at 189.311 kb on - strandat 189.311 kb on - strandat 189.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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186,691 - Atu6170 0.58 +0.8
186,711 - Atu6170 0.59 +1.1
186,718 - Atu6170 0.60 +1.0
186,756 + Atu6170 0.61 +0.7
186,756 + Atu6170 0.61 -0.9
186,756 + Atu6170 0.61 +0.2
186,756 + Atu6170 0.61 -0.4
186,756 + Atu6170 0.61 +0.6
186,756 + Atu6170 0.61 +1.8
186,756 + Atu6170 0.61 +0.9
186,756 + Atu6170 0.61 +0.4
186,756 + Atu6170 0.61 -1.4
186,756 + Atu6170 0.61 +1.2
186,756 + Atu6170 0.61 -0.9
186,756 + Atu6170 0.61 +0.1
186,764 - Atu6170 0.62 -0.5
186,764 - Atu6170 0.62 +1.2
186,764 - Atu6170 0.62 +0.3
186,764 - Atu6170 0.62 +0.8
186,764 - Atu6170 0.62 -1.2
186,764 - Atu6170 0.62 -0.8
186,764 - Atu6170 0.62 +1.3
186,798 + Atu6170 0.63 +0.2
186,849 + Atu6170 0.65 +0.9
186,880 - Atu6170 0.66 +3.5
186,908 - Atu6170 0.68 -1.2
186,929 - Atu6170 0.69 -0.3
186,975 + Atu6170 0.70 -0.7
186,992 - Atu6170 0.71 +2.2
187,006 + Atu6170 0.72 +0.0
187,006 - Atu6170 0.72 +0.3
187,014 - Atu6170 0.72 -0.5
187,014 - Atu6170 0.72 -1.2
187,014 - Atu6170 0.72 +0.8
187,014 - Atu6170 0.72 -0.5
187,030 + Atu6170 0.73 +1.8
187,030 + Atu6170 0.73 +0.1
187,035 + Atu6170 0.73 +0.0
187,038 - Atu6170 0.73 -0.2
187,038 - Atu6170 0.73 +0.5
187,038 - Atu6170 0.73 +2.9
187,043 - Atu6170 0.73 -0.2
187,144 + Atu6170 0.78 +1.2
187,150 + Atu6170 0.78 +0.4
187,150 + Atu6170 0.78 -0.4
187,158 - Atu6170 0.78 -0.8
187,182 - Atu6170 0.79 +1.0
187,379 - Atu6170 0.88 +0.5
187,405 + Atu6170 0.89 +0.2
187,453 + +0.1
187,473 - +1.7
187,473 - -0.3
187,482 - +2.5
187,496 - +1.0
187,520 + +2.5
187,569 + +0.2
187,569 + +0.8
187,569 + +0.7
187,577 - +1.4
187,577 - -0.4
187,594 - +0.5
187,606 + +0.9
187,606 + -0.3
187,606 + +0.6
187,606 + +0.1
187,614 - +0.3
187,614 - -1.1
187,617 + -2.0
187,622 + -0.3
187,681 - +1.9
187,705 + -0.3
187,731 + +4.5
187,731 + +2.7
187,818 - Atu6171 0.19 +0.6
187,839 + Atu6171 0.22 +0.9
187,847 - Atu6171 0.24 -0.5
187,847 - Atu6171 0.24 +1.0
187,864 - Atu6171 0.26 -0.6
187,892 + Atu6171 0.30 -0.6
188,026 - Atu6171 0.51 +0.8
188,036 + Atu6171 0.52 +1.9
188,044 - Atu6171 0.53 +0.4
188,095 - Atu6171 0.61 +1.1
188,103 - Atu6171 0.62 +2.9
188,136 + Atu6171 0.67 +1.3
188,229 + Atu6171 0.81 +1.7
188,269 + Atu6171 0.87 +0.0
188,277 - Atu6171 0.88 +0.1
188,305 + -0.7
188,334 + +0.4
188,348 + -1.5
188,356 - -0.7
188,356 - +0.6
188,374 + +0.2
188,379 + +0.9
188,444 + -0.1
188,452 - +1.3
188,452 - +0.8
188,485 - +0.6
188,528 - +0.3
188,542 - +0.7
188,548 + Atu6172 0.11 +2.3
188,584 + Atu6172 0.15 +1.2
188,586 - Atu6172 0.15 +2.5
188,594 - Atu6172 0.16 +1.1
188,598 + Atu6172 0.16 +2.0
188,598 + Atu6172 0.16 -0.2
188,607 + Atu6172 0.17 +0.7
188,662 - Atu6172 0.23 -0.1
188,699 - Atu6172 0.28 +0.3
188,781 + Atu6172 0.37 -0.0
188,789 - Atu6172 0.38 +0.8
188,789 - Atu6172 0.38 +0.1
188,789 - Atu6172 0.38 +0.3
188,799 - Atu6172 0.39 +1.7
188,801 + Atu6172 0.39 +0.9
188,809 - Atu6172 0.40 +0.5
188,818 + Atu6172 0.41 -0.1
188,818 + Atu6172 0.41 -0.4
188,818 + Atu6172 0.41 +0.2
188,826 - Atu6172 0.42 +0.1
188,898 + Atu6172 0.50 -1.0
188,921 + Atu6172 0.53 +0.1
188,981 + Atu6172 0.59 -0.7
188,988 + Atu6172 0.60 +2.2
189,003 + Atu6172 0.62 -0.4
189,043 + Atu6172 0.66 -0.2
189,061 + Atu6172 0.68 +0.2
189,062 - Atu6172 0.68 +0.3
189,069 - Atu6172 0.69 +0.5
189,133 + Atu6172 0.76 -0.5
189,133 + Atu6172 0.76 +2.7
189,133 + Atu6172 0.76 +3.2
189,133 + Atu6172 0.76 +1.9
189,133 + Atu6172 0.76 +0.7
189,133 + Atu6172 0.76 -0.2
189,141 - Atu6172 0.77 +0.6
189,311 - +2.6
189,311 - +0.6
189,343 - +2.9

Or see this region's nucleotide sequence