Strain Fitness in Agrobacterium fabrum C58 around Atu5508

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5507 and Atu5508 are separated by 55 nucleotidesAtu5508 and Atu5509 are separated by 297 nucleotides Atu5507: Atu5507 - gamma-glutamyltranspeptidase, at 498,561 to 500,318 Atu5507 Atu5508: Atu5508 - glutathione S-transferase, at 500,374 to 501,072 Atu5508 Atu5509: Atu5509 - two component sensor kinase/response regulator hybrid, at 501,370 to 503,415 Atu5509 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 499.403 kb on + strand, within Atu5507at 499.411 kb on - strand, within Atu5507at 499.431 kb on - strand, within Atu5507at 499.552 kb on + strand, within Atu5507at 499.571 kb on - strand, within Atu5507at 499.637 kb on + strand, within Atu5507at 499.660 kb on + strand, within Atu5507at 499.699 kb on - strand, within Atu5507at 499.730 kb on - strand, within Atu5507at 499.813 kb on - strand, within Atu5507at 499.911 kb on + strand, within Atu5507at 499.976 kb on + strand, within Atu5507at 500.085 kb on - strand, within Atu5507at 500.129 kb on - strand, within Atu5507at 500.255 kb on - strandat 500.283 kb on + strandat 500.322 kb on - strandat 500.352 kb on + strandat 500.389 kb on - strandat 500.459 kb on + strand, within Atu5508at 500.684 kb on + strand, within Atu5508at 500.693 kb on + strand, within Atu5508at 500.701 kb on - strand, within Atu5508at 500.728 kb on + strand, within Atu5508at 500.737 kb on + strand, within Atu5508at 500.827 kb on + strand, within Atu5508at 500.844 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.950 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.952 kb on + strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.958 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.960 kb on - strand, within Atu5508at 500.994 kb on - strand, within Atu5508at 501.010 kb on + strandat 501.010 kb on + strandat 501.020 kb on - strandat 501.077 kb on + strandat 501.102 kb on - strandat 501.139 kb on - strandat 501.147 kb on - strandat 501.167 kb on + strandat 501.168 kb on + strandat 501.168 kb on + strandat 501.183 kb on + strandat 501.183 kb on + strandat 501.201 kb on - strandat 501.268 kb on + strandat 501.268 kb on + strandat 501.369 kb on - strandat 501.424 kb on - strandat 501.433 kb on - strandat 501.520 kb on + strandat 501.520 kb on + strandat 501.534 kb on - strandat 501.554 kb on - strandat 501.554 kb on - strandat 501.555 kb on + strandat 501.560 kb on + strandat 501.571 kb on + strandat 501.579 kb on - strand, within Atu5509at 501.662 kb on + strand, within Atu5509at 501.724 kb on + strand, within Atu5509at 501.756 kb on - strand, within Atu5509at 501.769 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.788 kb on + strand, within Atu5509at 501.796 kb on - strand, within Atu5509at 501.796 kb on - strand, within Atu5509at 501.877 kb on - strand, within Atu5509at 501.879 kb on + strand, within Atu5509at 501.879 kb on + strand, within Atu5509at 501.887 kb on + strand, within Atu5509at 501.895 kb on - strand, within Atu5509at 501.950 kb on - strand, within Atu5509at 501.958 kb on + strand, within Atu5509at 501.958 kb on + strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.961 kb on - strand, within Atu5509at 501.966 kb on - strand, within Atu5509at 502.020 kb on - strand, within Atu5509at 502.049 kb on + strand, within Atu5509

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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499,403 + Atu5507 0.48 -0.0
499,411 - Atu5507 0.48 +4.1
499,431 - Atu5507 0.49 +0.5
499,552 + Atu5507 0.56 -0.7
499,571 - Atu5507 0.57 -0.5
499,637 + Atu5507 0.61 +2.2
499,660 + Atu5507 0.63 +2.1
499,699 - Atu5507 0.65 +0.0
499,730 - Atu5507 0.66 +2.0
499,813 - Atu5507 0.71 +0.9
499,911 + Atu5507 0.77 +3.1
499,976 + Atu5507 0.80 +0.3
500,085 - Atu5507 0.87 +1.8
500,129 - Atu5507 0.89 +1.0
500,255 - +0.1
500,283 + +1.1
500,322 - +1.5
500,352 + +0.9
500,389 - +0.4
500,459 + Atu5508 0.12 +1.1
500,684 + Atu5508 0.44 +0.5
500,693 + Atu5508 0.46 +0.7
500,701 - Atu5508 0.47 -0.8
500,728 + Atu5508 0.51 -1.3
500,737 + Atu5508 0.52 -0.0
500,827 + Atu5508 0.65 +0.2
500,844 + Atu5508 0.67 +0.7
500,950 + Atu5508 0.82 -0.9
500,950 + Atu5508 0.82 +0.3
500,952 + Atu5508 0.83 +0.3
500,952 + Atu5508 0.83 +0.3
500,958 - Atu5508 0.84 +0.1
500,958 - Atu5508 0.84 -1.1
500,960 - Atu5508 0.84 +0.8
500,960 - Atu5508 0.84 -0.1
500,960 - Atu5508 0.84 +1.1
500,960 - Atu5508 0.84 -0.5
500,960 - Atu5508 0.84 +2.0
500,994 - Atu5508 0.89 -0.5
501,010 + -0.3
501,010 + -1.0
501,020 - +0.0
501,077 + +0.7
501,102 - +4.1
501,139 - +1.7
501,147 - -0.6
501,167 + +0.8
501,168 + +0.6
501,168 + +1.2
501,183 + +0.9
501,183 + -1.7
501,201 - +3.1
501,268 + -1.4
501,268 + -2.1
501,369 - -0.4
501,424 - +1.0
501,433 - -0.1
501,520 + -0.1
501,520 + +0.7
501,534 - -0.6
501,554 - -0.2
501,554 - +1.3
501,555 + +0.0
501,560 + +0.4
501,571 + +0.8
501,579 - Atu5509 0.10 +0.8
501,662 + Atu5509 0.14 -0.3
501,724 + Atu5509 0.17 -0.2
501,756 - Atu5509 0.19 -2.4
501,769 + Atu5509 0.20 +2.3
501,788 + Atu5509 0.20 -1.4
501,788 + Atu5509 0.20 +0.3
501,788 + Atu5509 0.20 -0.6
501,796 - Atu5509 0.21 +0.4
501,796 - Atu5509 0.21 +0.1
501,877 - Atu5509 0.25 +0.4
501,879 + Atu5509 0.25 -0.0
501,879 + Atu5509 0.25 -0.4
501,887 + Atu5509 0.25 +0.9
501,895 - Atu5509 0.26 +0.7
501,950 - Atu5509 0.28 -0.5
501,958 + Atu5509 0.29 -0.3
501,958 + Atu5509 0.29 +0.3
501,961 - Atu5509 0.29 -0.4
501,961 - Atu5509 0.29 +0.7
501,961 - Atu5509 0.29 +0.7
501,966 - Atu5509 0.29 +1.7
502,020 - Atu5509 0.32 +1.6
502,049 + Atu5509 0.33 +1.1

Or see this region's nucleotide sequence