Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5039 and Atu5040 are separated by 73 nucleotides Atu5040 and Atu5041 overlap by 4 nucleotides
Atu5039: Atu5039 - hypothetical protein, at 39,240 to 40,421
Atu5039
Atu5040: Atu5040 - hypothetical protein, at 40,495 to 41,397
Atu5040
Atu5041: Atu5041 - plasmid partitioning protein, at 41,394 to 42,281
Atu5041
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 38.267 kb on + strand at 38.275 kb on - strand at 38.280 kb on - strand at 38.316 kb on - strand at 38.324 kb on + strand at 38.354 kb on + strand at 38.390 kb on + strand at 38.398 kb on - strand at 38.398 kb on - strand at 38.421 kb on + strand at 38.438 kb on + strand at 38.446 kb on - strand at 38.446 kb on - strand at 38.511 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.553 kb on + strand at 38.561 kb on - strand at 38.563 kb on + strand at 38.563 kb on + strand at 38.571 kb on - strand at 38.571 kb on - strand at 38.571 kb on - strand at 38.595 kb on - strand at 38.689 kb on + strand at 38.702 kb on - strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.748 kb on - strand at 38.748 kb on - strand at 38.748 kb on - strand at 38.786 kb on - strand at 38.812 kb on + strand at 38.921 kb on - strand at 38.932 kb on + strand at 38.932 kb on + strand at 38.940 kb on - strand at 39.104 kb on + strand at 39.109 kb on + strand at 39.112 kb on - strand at 39.139 kb on - strand at 39.304 kb on - strand at 39.306 kb on - strand at 39.379 kb on + strand, within Atu5039 at 39.394 kb on + strand, within Atu5039 at 39.410 kb on - strand, within Atu5039 at 39.481 kb on - strand, within Atu5039 at 39.594 kb on - strand, within Atu5039 at 39.600 kb on + strand, within Atu5039 at 39.607 kb on + strand, within Atu5039 at 39.607 kb on + strand, within Atu5039 at 39.615 kb on - strand, within Atu5039 at 39.650 kb on - strand, within Atu5039 at 39.657 kb on + strand, within Atu5039 at 39.665 kb on - strand, within Atu5039 at 39.669 kb on + strand, within Atu5039 at 39.669 kb on + strand, within Atu5039 at 39.671 kb on + strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.677 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.679 kb on - strand, within Atu5039 at 39.690 kb on - strand, within Atu5039 at 39.698 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.851 kb on + strand, within Atu5039 at 39.859 kb on - strand, within Atu5039 at 39.864 kb on - strand, within Atu5039 at 39.937 kb on + strand, within Atu5039 at 39.945 kb on - strand, within Atu5039 at 39.977 kb on + strand, within Atu5039 at 40.074 kb on - strand, within Atu5039 at 40.288 kb on - strand, within Atu5039 at 40.293 kb on - strand, within Atu5039 at 40.318 kb on + strand at 40.329 kb on + strand at 40.432 kb on + strand at 40.448 kb on - strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.457 kb on + strand at 40.464 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.465 kb on - strand at 40.490 kb on - strand at 40.518 kb on + strand at 40.533 kb on - strand at 40.568 kb on + strand at 40.671 kb on + strand, within Atu5040 at 40.680 kb on + strand, within Atu5040 at 40.799 kb on + strand, within Atu5040 at 40.827 kb on - strand, within Atu5040 at 40.841 kb on + strand, within Atu5040 at 40.867 kb on - strand, within Atu5040 at 40.944 kb on + strand, within Atu5040 at 40.958 kb on + strand, within Atu5040 at 40.966 kb on - strand, within Atu5040 at 41.009 kb on + strand, within Atu5040 at 41.036 kb on + strand, within Atu5040 at 41.044 kb on - strand, within Atu5040 at 41.070 kb on + strand, within Atu5040 at 41.075 kb on + strand, within Atu5040 at 41.104 kb on - strand, within Atu5040 at 41.108 kb on + strand, within Atu5040 at 41.116 kb on - strand, within Atu5040 at 41.228 kb on - strand, within Atu5040 at 41.299 kb on + strand, within Atu5040 at 41.307 kb on - strand at 41.350 kb on - strand at 41.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 38,267 + -0.9 38,275 - +2.0 38,280 - +0.6 38,316 - +1.4 38,324 + +0.5 38,354 + -0.6 38,390 + -1.0 38,398 - -0.2 38,398 - -0.7 38,421 + -0.6 38,438 + +1.6 38,446 - +1.0 38,446 - +0.2 38,511 + +3.0 38,519 - +2.0 38,519 - +0.5 38,553 + +1.6 38,561 - +0.4 38,563 + +1.6 38,563 + -0.0 38,571 - +0.3 38,571 - +0.6 38,571 - +1.7 38,595 - +0.9 38,689 + +0.2 38,702 - -0.8 38,740 + +2.3 38,740 + +0.7 38,748 - +0.3 38,748 - +1.9 38,748 - -0.3 38,786 - -1.8 38,812 + +2.1 38,921 - +1.0 38,932 + +0.9 38,932 + +0.5 38,940 - -0.1 39,104 + +1.6 39,109 + +0.5 39,112 - -0.2 39,139 - +1.5 39,304 - -0.4 39,306 - +1.8 39,379 + Atu5039 0.12 +0.7 39,394 + Atu5039 0.13 -0.2 39,410 - Atu5039 0.14 +0.9 39,481 - Atu5039 0.20 -0.1 39,594 - Atu5039 0.30 +0.0 39,600 + Atu5039 0.30 +0.3 39,607 + Atu5039 0.31 -0.6 39,607 + Atu5039 0.31 +0.0 39,615 - Atu5039 0.32 +1.9 39,650 - Atu5039 0.35 -1.1 39,657 + Atu5039 0.35 +0.7 39,665 - Atu5039 0.36 +1.8 39,669 + Atu5039 0.36 -0.2 39,669 + Atu5039 0.36 +0.2 39,671 + Atu5039 0.36 +0.7 39,677 - Atu5039 0.37 -0.4 39,677 - Atu5039 0.37 -0.2 39,677 - Atu5039 0.37 +0.3 39,679 - Atu5039 0.37 +0.9 39,679 - Atu5039 0.37 -0.3 39,679 - Atu5039 0.37 +0.6 39,690 - Atu5039 0.38 -0.2 39,698 + Atu5039 0.39 +0.2 39,851 + Atu5039 0.52 +1.6 39,851 + Atu5039 0.52 +2.1 39,851 + Atu5039 0.52 +0.7 39,859 - Atu5039 0.52 +0.8 39,864 - Atu5039 0.53 -0.0 39,937 + Atu5039 0.59 +0.5 39,945 - Atu5039 0.60 -1.3 39,977 + Atu5039 0.62 +2.1 40,074 - Atu5039 0.71 -1.0 40,288 - Atu5039 0.89 -1.3 40,293 - Atu5039 0.89 -0.6 40,318 + +0.2 40,329 + +0.2 40,432 + +1.0 40,448 - +0.0 40,457 + +0.7 40,457 + +1.2 40,457 + +1.6 40,457 + +0.7 40,464 - +0.3 40,465 - -0.4 40,465 - +0.3 40,465 - +0.0 40,465 - -0.0 40,490 - -0.4 40,518 + +0.6 40,533 - -0.2 40,568 + -0.2 40,671 + Atu5040 0.19 +3.1 40,680 + Atu5040 0.20 +0.9 40,799 + Atu5040 0.34 +0.5 40,827 - Atu5040 0.37 +1.2 40,841 + Atu5040 0.38 -0.4 40,867 - Atu5040 0.41 +1.4 40,944 + Atu5040 0.50 -0.3 40,958 + Atu5040 0.51 +1.0 40,966 - Atu5040 0.52 +1.0 41,009 + Atu5040 0.57 +0.9 41,036 + Atu5040 0.60 +1.5 41,044 - Atu5040 0.61 +0.4 41,070 + Atu5040 0.64 +1.2 41,075 + Atu5040 0.64 -0.6 41,104 - Atu5040 0.67 +0.6 41,108 + Atu5040 0.68 -1.3 41,116 - Atu5040 0.69 -0.7 41,228 - Atu5040 0.81 +0.6 41,299 + Atu5040 0.89 +0.0 41,307 - +0.7 41,350 - +0.6 41,365 - +0.3
Or see this region's nucleotide sequence