Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0612 and Atu0613 are separated by 307 nucleotides Atu0613 and Atu0614 are separated by 359 nucleotides
Atu0612: Atu0612 - ABC transporter, membrane spanning protein, at 599,651 to 600,463
Atu0612
Atu0613: Atu0613 - ABC transporter, membrane spanning protein, at 600,771 to 602,351
Atu0613
Atu0614: Atu0614 - two component sensor kinase, at 602,711 to 606,538
Atu0614
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 599.821 kb on - strand, within Atu0612 at 599.899 kb on + strand, within Atu0612 at 599.946 kb on - strand, within Atu0612 at 599.960 kb on - strand, within Atu0612 at 599.973 kb on - strand, within Atu0612 at 600.062 kb on + strand, within Atu0612 at 600.123 kb on + strand, within Atu0612 at 600.127 kb on + strand, within Atu0612 at 600.316 kb on + strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.405 kb on + strand at 600.427 kb on - strand at 600.471 kb on - strand at 600.712 kb on + strand at 600.871 kb on - strand at 600.927 kb on - strand at 601.026 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.049 kb on + strand, within Atu0613 at 601.057 kb on - strand, within Atu0613 at 601.067 kb on - strand, within Atu0613 at 601.067 kb on - strand, within Atu0613 at 601.288 kb on + strand, within Atu0613 at 601.288 kb on + strand, within Atu0613 at 601.294 kb on - strand, within Atu0613 at 601.414 kb on - strand, within Atu0613 at 601.538 kb on - strand, within Atu0613 at 601.538 kb on - strand, within Atu0613 at 601.594 kb on - strand, within Atu0613 at 601.650 kb on + strand, within Atu0613 at 601.686 kb on + strand, within Atu0613 at 601.736 kb on + strand, within Atu0613 at 601.757 kb on - strand, within Atu0613 at 601.792 kb on + strand, within Atu0613 at 601.874 kb on + strand, within Atu0613 at 601.882 kb on - strand, within Atu0613 at 601.957 kb on + strand, within Atu0613 at 601.964 kb on + strand, within Atu0613 at 601.965 kb on - strand, within Atu0613 at 601.972 kb on - strand, within Atu0613 at 602.136 kb on - strand, within Atu0613 at 602.156 kb on + strand, within Atu0613 at 602.439 kb on + strand at 602.466 kb on + strand at 602.488 kb on + strand at 602.488 kb on + strand at 602.488 kb on + strand at 602.496 kb on - strand at 602.496 kb on - strand at 602.496 kb on - strand at 602.519 kb on + strand at 602.532 kb on - strand at 602.544 kb on - strand at 602.544 kb on - strand at 602.605 kb on + strand at 602.605 kb on + strand at 602.613 kb on - strand at 602.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 599,821 - Atu0612 0.21 -1.0 599,899 + Atu0612 0.31 -1.4 599,946 - Atu0612 0.36 -1.6 599,960 - Atu0612 0.38 +6.2 599,973 - Atu0612 0.40 -1.8 600,062 + Atu0612 0.51 -1.8 600,123 + Atu0612 0.58 +0.3 600,127 + Atu0612 0.59 +0.8 600,316 + Atu0612 0.82 +0.2 600,367 - Atu0612 0.88 -3.6 600,367 - Atu0612 0.88 +0.1 600,367 - Atu0612 0.88 -0.8 600,405 + -0.6 600,427 - -2.1 600,471 - +0.3 600,712 + +0.2 600,871 - -0.3 600,927 - +1.3 601,026 + Atu0613 0.16 -0.2 601,049 + Atu0613 0.18 +0.1 601,049 + Atu0613 0.18 +0.7 601,049 + Atu0613 0.18 +0.2 601,057 - Atu0613 0.18 +0.1 601,067 - Atu0613 0.19 +0.1 601,067 - Atu0613 0.19 +1.2 601,288 + Atu0613 0.33 -1.1 601,288 + Atu0613 0.33 -0.1 601,294 - Atu0613 0.33 -0.8 601,414 - Atu0613 0.41 -0.6 601,538 - Atu0613 0.49 -0.6 601,538 - Atu0613 0.49 +0.4 601,594 - Atu0613 0.52 +0.1 601,650 + Atu0613 0.56 +0.6 601,686 + Atu0613 0.58 -0.0 601,736 + Atu0613 0.61 +0.1 601,757 - Atu0613 0.62 +1.4 601,792 + Atu0613 0.65 +0.1 601,874 + Atu0613 0.70 +0.8 601,882 - Atu0613 0.70 -0.5 601,957 + Atu0613 0.75 -1.0 601,964 + Atu0613 0.75 -0.3 601,965 - Atu0613 0.76 +0.1 601,972 - Atu0613 0.76 +0.1 602,136 - Atu0613 0.86 -0.2 602,156 + Atu0613 0.88 -0.1 602,439 + -0.5 602,466 + +0.8 602,488 + +0.7 602,488 + +0.9 602,488 + +0.1 602,496 - +0.2 602,496 - +0.2 602,496 - +0.2 602,519 + +0.3 602,532 - -0.0 602,544 - +0.5 602,544 - +0.2 602,605 + +0.2 602,605 + -0.7 602,613 - +0.1 602,652 + +0.1
Or see this region's nucleotide sequence