Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4345

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4342 and PfGW456L13_4343 are separated by 9 nucleotidesPfGW456L13_4343 and PfGW456L13_4344 are separated by 60 nucleotidesPfGW456L13_4344 and PfGW456L13_4345 overlap by 10 nucleotidesPfGW456L13_4345 and PfGW456L13_4346 are separated by 100 nucleotidesPfGW456L13_4346 and PfGW456L13_4347 are separated by 30 nucleotides PfGW456L13_4342 - Flagellar motor switch protein FliM, at 4,853,456 to 4,854,424 _4342 PfGW456L13_4343 - Flagellar biosynthesis protein FliL, at 4,854,434 to 4,854,937 _4343 PfGW456L13_4344 - hypothetical protein, at 4,854,998 to 4,855,180 _4344 PfGW456L13_4345 - Flagellar hook-length control protein FliK, at 4,855,171 to 4,856,523 _4345 PfGW456L13_4346 - Hpt domain protein, at 4,856,624 to 4,856,974 _4346 PfGW456L13_4347 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,857,005 to 4,858,711 _4347 Position (kb) 4855 4856 4857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4854.235 kb on - strand, within PfGW456L13_4342at 4854.312 kb on + strand, within PfGW456L13_4342at 4854.312 kb on + strand, within PfGW456L13_4342at 4854.313 kb on - strand, within PfGW456L13_4342at 4854.313 kb on - strand, within PfGW456L13_4342at 4854.313 kb on - strand, within PfGW456L13_4342at 4854.313 kb on - strand, within PfGW456L13_4342at 4854.353 kb on + strandat 4854.353 kb on + strandat 4854.435 kb on + strandat 4854.436 kb on - strandat 4854.436 kb on - strandat 4854.444 kb on - strandat 4854.444 kb on - strandat 4854.451 kb on + strandat 4854.452 kb on - strandat 4854.684 kb on + strand, within PfGW456L13_4343at 4854.685 kb on - strand, within PfGW456L13_4343at 4854.685 kb on - strand, within PfGW456L13_4343at 4854.685 kb on - strand, within PfGW456L13_4343at 4854.685 kb on - strand, within PfGW456L13_4343at 4854.782 kb on + strand, within PfGW456L13_4343at 4854.819 kb on + strand, within PfGW456L13_4343at 4854.820 kb on - strand, within PfGW456L13_4343at 4854.820 kb on - strand, within PfGW456L13_4343at 4854.878 kb on - strand, within PfGW456L13_4343at 4854.914 kb on + strandat 4854.914 kb on + strandat 4854.914 kb on + strandat 4854.914 kb on + strandat 4854.915 kb on - strandat 4854.943 kb on + strandat 4854.944 kb on - strandat 4854.997 kb on + strandat 4854.998 kb on - strandat 4855.008 kb on + strandat 4855.009 kb on - strandat 4855.094 kb on - strand, within PfGW456L13_4344at 4855.119 kb on + strand, within PfGW456L13_4344at 4855.120 kb on - strand, within PfGW456L13_4344at 4855.156 kb on + strand, within PfGW456L13_4344at 4855.156 kb on + strand, within PfGW456L13_4344at 4855.156 kb on + strand, within PfGW456L13_4344at 4855.156 kb on + strand, within PfGW456L13_4344at 4855.156 kb on + strand, within PfGW456L13_4344at 4855.157 kb on - strand, within PfGW456L13_4344at 4855.178 kb on + strandat 4855.179 kb on - strandat 4855.179 kb on - strandat 4855.179 kb on - strandat 4855.182 kb on - strandat 4855.216 kb on - strandat 4855.216 kb on - strandat 4855.216 kb on - strandat 4855.568 kb on + strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.569 kb on - strand, within PfGW456L13_4345at 4855.806 kb on + strand, within PfGW456L13_4345at 4855.925 kb on - strand, within PfGW456L13_4345at 4856.029 kb on + strand, within PfGW456L13_4345at 4856.030 kb on - strand, within PfGW456L13_4345at 4856.030 kb on - strand, within PfGW456L13_4345at 4856.105 kb on - strand, within PfGW456L13_4345at 4856.116 kb on + strand, within PfGW456L13_4345at 4856.116 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strandat 4856.133 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.399 kb on + strandat 4856.400 kb on - strandat 4856.400 kb on - strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.556 kb on - strandat 4856.661 kb on + strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4857.006 kb on + strandat 4857.006 kb on + strandat 4857.026 kb on - strandat 4857.026 kb on - strandat 4857.026 kb on - strandat 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.279 kb on + strand, within PfGW456L13_4347at 4857.283 kb on - strand, within PfGW456L13_4347at 4857.357 kb on + strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.378 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.486 kb on - strand, within PfGW456L13_4347at 4857.486 kb on - strand, within PfGW456L13_4347

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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4,854,235 - PfGW456L13_4342 0.80 +0.7
4,854,312 + PfGW456L13_4342 0.88 +0.8
4,854,312 + PfGW456L13_4342 0.88 +0.7
4,854,313 - PfGW456L13_4342 0.88 -0.2
4,854,313 - PfGW456L13_4342 0.88 -0.7
4,854,313 - PfGW456L13_4342 0.88 +0.5
4,854,313 - PfGW456L13_4342 0.88 +0.0
4,854,353 + -0.2
4,854,353 + -0.0
4,854,435 + -0.8
4,854,436 - +0.3
4,854,436 - -0.3
4,854,444 - +1.0
4,854,444 - +0.1
4,854,451 + -0.9
4,854,452 - -1.1
4,854,684 + PfGW456L13_4343 0.50 +0.3
4,854,685 - PfGW456L13_4343 0.50 -1.4
4,854,685 - PfGW456L13_4343 0.50 -0.1
4,854,685 - PfGW456L13_4343 0.50 +1.1
4,854,685 - PfGW456L13_4343 0.50 +0.0
4,854,782 + PfGW456L13_4343 0.69 -0.1
4,854,819 + PfGW456L13_4343 0.76 +0.8
4,854,820 - PfGW456L13_4343 0.77 +1.1
4,854,820 - PfGW456L13_4343 0.77 -1.0
4,854,878 - PfGW456L13_4343 0.88 -0.3
4,854,914 + +0.1
4,854,914 + +1.0
4,854,914 + -0.1
4,854,914 + +0.1
4,854,915 - -0.2
4,854,943 + +0.8
4,854,944 - +0.3
4,854,997 + +0.0
4,854,998 - -0.2
4,855,008 + -0.3
4,855,009 - -0.4
4,855,094 - PfGW456L13_4344 0.52 -0.5
4,855,119 + PfGW456L13_4344 0.66 +0.8
4,855,120 - PfGW456L13_4344 0.67 -0.9
4,855,156 + PfGW456L13_4344 0.86 -0.2
4,855,156 + PfGW456L13_4344 0.86 -0.2
4,855,156 + PfGW456L13_4344 0.86 -0.2
4,855,156 + PfGW456L13_4344 0.86 +0.6
4,855,156 + PfGW456L13_4344 0.86 +1.0
4,855,157 - PfGW456L13_4344 0.87 -0.8
4,855,178 + -0.7
4,855,179 - -0.2
4,855,179 - -0.7
4,855,179 - +0.2
4,855,182 - +0.8
4,855,216 - -1.0
4,855,216 - -0.7
4,855,216 - -0.9
4,855,568 + PfGW456L13_4345 0.29 -0.3
4,855,569 - PfGW456L13_4345 0.29 +1.0
4,855,569 - PfGW456L13_4345 0.29 +0.1
4,855,569 - PfGW456L13_4345 0.29 -2.8
4,855,569 - PfGW456L13_4345 0.29 -0.0
4,855,569 - PfGW456L13_4345 0.29 -0.8
4,855,569 - PfGW456L13_4345 0.29 -0.0
4,855,569 - PfGW456L13_4345 0.29 -0.1
4,855,569 - PfGW456L13_4345 0.29 +0.8
4,855,569 - PfGW456L13_4345 0.29 +0.7
4,855,569 - PfGW456L13_4345 0.29 +0.3
4,855,806 + PfGW456L13_4345 0.47 +1.3
4,855,925 - PfGW456L13_4345 0.56 -0.0
4,856,029 + PfGW456L13_4345 0.63 -0.4
4,856,030 - PfGW456L13_4345 0.63 -0.9
4,856,030 - PfGW456L13_4345 0.63 -0.9
4,856,105 - PfGW456L13_4345 0.69 -0.8
4,856,116 + PfGW456L13_4345 0.70 -0.7
4,856,116 + PfGW456L13_4345 0.70 -0.5
4,856,133 + PfGW456L13_4345 0.71 -1.1
4,856,133 + +1.4
4,856,133 + PfGW456L13_4345 0.71 -1.2
4,856,133 + PfGW456L13_4345 0.71 -0.7
4,856,134 - PfGW456L13_4345 0.71 -2.0
4,856,134 - PfGW456L13_4345 0.71 -0.3
4,856,134 - PfGW456L13_4345 0.71 -0.6
4,856,134 - PfGW456L13_4345 0.71 -0.5
4,856,399 + +0.7
4,856,400 - +0.0
4,856,400 - -0.5
4,856,551 + -2.0
4,856,551 + +1.0
4,856,551 + -0.4
4,856,551 + -1.7
4,856,552 - -0.8
4,856,552 - -3.1
4,856,552 - +0.4
4,856,552 - +0.9
4,856,552 - -0.6
4,856,552 - +0.1
4,856,552 - -1.3
4,856,556 - +0.3
4,856,661 + PfGW456L13_4346 0.11 +0.0
4,856,789 - PfGW456L13_4346 0.47 -0.2
4,856,789 - PfGW456L13_4346 0.47 +0.3
4,856,789 - PfGW456L13_4346 0.47 -1.3
4,856,789 - PfGW456L13_4346 0.47 -1.0
4,856,789 - PfGW456L13_4346 0.47 -0.8
4,857,006 + -2.1
4,857,006 + -0.4
4,857,026 - +2.3
4,857,026 - -0.1
4,857,026 - +0.3
4,857,233 + PfGW456L13_4347 0.13 -0.7
4,857,233 + PfGW456L13_4347 0.13 +0.6
4,857,233 + PfGW456L13_4347 0.13 -0.1
4,857,233 + PfGW456L13_4347 0.13 -1.0
4,857,233 + PfGW456L13_4347 0.13 -0.9
4,857,233 + PfGW456L13_4347 0.13 +0.7
4,857,233 + PfGW456L13_4347 0.13 +0.1
4,857,233 + PfGW456L13_4347 0.13 +0.3
4,857,233 + PfGW456L13_4347 0.13 -1.1
4,857,233 + PfGW456L13_4347 0.13 +0.7
4,857,233 + PfGW456L13_4347 0.13 -0.9
4,857,233 + PfGW456L13_4347 0.13 -0.0
4,857,233 + PfGW456L13_4347 0.13 +0.7
4,857,233 + PfGW456L13_4347 0.13 +1.4
4,857,233 + PfGW456L13_4347 0.13 +0.2
4,857,234 - PfGW456L13_4347 0.13 +1.8
4,857,234 - PfGW456L13_4347 0.13 +1.3
4,857,234 - PfGW456L13_4347 0.13 +1.8
4,857,234 - PfGW456L13_4347 0.13 +0.5
4,857,234 - PfGW456L13_4347 0.13 +0.4
4,857,234 - PfGW456L13_4347 0.13 -0.4
4,857,234 - PfGW456L13_4347 0.13 +0.7
4,857,234 - PfGW456L13_4347 0.13 +1.7
4,857,234 - PfGW456L13_4347 0.13 +0.2
4,857,234 - PfGW456L13_4347 0.13 -0.3
4,857,234 - PfGW456L13_4347 0.13 +0.5
4,857,234 - PfGW456L13_4347 0.13 +0.1
4,857,234 - PfGW456L13_4347 0.13 +0.9
4,857,234 - PfGW456L13_4347 0.13 +0.8
4,857,234 - PfGW456L13_4347 0.13 -0.3
4,857,234 - PfGW456L13_4347 0.13 +0.2
4,857,234 - PfGW456L13_4347 0.13 +0.1
4,857,234 - PfGW456L13_4347 0.13 -0.1
4,857,234 - PfGW456L13_4347 0.13 -0.5
4,857,234 - PfGW456L13_4347 0.13 +0.1
4,857,234 - PfGW456L13_4347 0.13 -0.3
4,857,237 + PfGW456L13_4347 0.14 +0.0
4,857,237 + PfGW456L13_4347 0.14 -0.1
4,857,237 + PfGW456L13_4347 0.14 +2.7
4,857,237 + PfGW456L13_4347 0.14 -1.9
4,857,237 + PfGW456L13_4347 0.14 -0.4
4,857,238 - PfGW456L13_4347 0.14 -0.2
4,857,238 - PfGW456L13_4347 0.14 -0.2
4,857,238 - PfGW456L13_4347 0.14 +2.4
4,857,238 - PfGW456L13_4347 0.14 -0.0
4,857,238 - PfGW456L13_4347 0.14 +0.4
4,857,238 - PfGW456L13_4347 0.14 +0.1
4,857,238 - PfGW456L13_4347 0.14 +0.9
4,857,238 - PfGW456L13_4347 0.14 +0.9
4,857,238 - PfGW456L13_4347 0.14 -1.4
4,857,238 - PfGW456L13_4347 0.14 +0.5
4,857,238 - PfGW456L13_4347 0.14 -0.3
4,857,249 - PfGW456L13_4347 0.14 +0.4
4,857,249 - PfGW456L13_4347 0.14 +0.6
4,857,249 - PfGW456L13_4347 0.14 +0.6
4,857,279 + PfGW456L13_4347 0.16 -0.5
4,857,283 - PfGW456L13_4347 0.16 +0.6
4,857,357 + PfGW456L13_4347 0.21 -0.5
4,857,358 - PfGW456L13_4347 0.21 +0.5
4,857,358 - PfGW456L13_4347 0.21 -0.0
4,857,358 - PfGW456L13_4347 0.21 +2.1
4,857,378 + PfGW456L13_4347 0.22 +0.6
4,857,435 + PfGW456L13_4347 0.25 -0.1
4,857,435 + PfGW456L13_4347 0.25 -0.7
4,857,435 + PfGW456L13_4347 0.25 +0.3
4,857,435 + PfGW456L13_4347 0.25 +1.4
4,857,436 - PfGW456L13_4347 0.25 +0.7
4,857,436 - PfGW456L13_4347 0.25 +0.4
4,857,436 - PfGW456L13_4347 0.25 -0.6
4,857,486 - PfGW456L13_4347 0.28 -0.1
4,857,486 - PfGW456L13_4347 0.28 -0.4

Or see this region's nucleotide sequence