Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_432

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_431 and PfGW456L13_432 are separated by 15 nucleotidesPfGW456L13_432 and PfGW456L13_433 overlap by 4 nucleotidesPfGW456L13_433 and PfGW456L13_434 are separated by 145 nucleotides PfGW456L13_431 - Taurine-binding periplasmic protein TauA, at 496,995 to 497,972 _431 PfGW456L13_432 - Taurine transport ATP-binding protein TauB, at 497,988 to 498,782 _432 PfGW456L13_433 - Taurine transport system permease protein TauC, at 498,779 to 499,612 _433 PfGW456L13_434 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 499,758 to 500,600 _434 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2at 497.015 kb on - strandat 497.015 kb on - strandat 497.015 kb on - strandat 497.015 kb on - strandat 497.133 kb on + strand, within PfGW456L13_431at 497.157 kb on - strand, within PfGW456L13_431at 497.189 kb on + strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.395 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.410 kb on - strand, within PfGW456L13_431at 497.526 kb on + strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.700 kb on + strand, within PfGW456L13_431at 497.764 kb on + strand, within PfGW456L13_431at 497.934 kb on + strandat 497.943 kb on + strandat 497.944 kb on - strandat 497.998 kb on + strandat 498.025 kb on - strandat 498.057 kb on - strandat 498.220 kb on + strand, within PfGW456L13_432at 498.220 kb on + strand, within PfGW456L13_432at 498.221 kb on - strand, within PfGW456L13_432at 498.221 kb on - strand, within PfGW456L13_432at 498.221 kb on - strand, within PfGW456L13_432at 498.660 kb on + strand, within PfGW456L13_432at 498.661 kb on - strand, within PfGW456L13_432at 498.727 kb on + strandat 498.727 kb on + strandat 498.727 kb on + strandat 498.727 kb on + strandat 498.728 kb on - strandat 498.728 kb on - strandat 498.752 kb on + strandat 498.752 kb on + strandat 498.753 kb on - strandat 498.753 kb on - strandat 498.789 kb on - strandat 498.828 kb on + strandat 498.829 kb on - strandat 498.829 kb on - strandat 498.829 kb on - strandat 498.897 kb on + strand, within PfGW456L13_433at 498.979 kb on - strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.995 kb on + strand, within PfGW456L13_433at 498.997 kb on + strand, within PfGW456L13_433at 498.997 kb on + strand, within PfGW456L13_433at 499.148 kb on + strand, within PfGW456L13_433at 499.173 kb on - strand, within PfGW456L13_433at 499.173 kb on - strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.232 kb on + strand, within PfGW456L13_433at 499.512 kb on + strand, within PfGW456L13_433at 499.513 kb on - strand, within PfGW456L13_433at 499.513 kb on - strand, within PfGW456L13_433at 499.619 kb on - strandat 499.625 kb on + strandat 499.626 kb on - strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.693 kb on + strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.694 kb on - strandat 499.725 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
497,015 - -0.1
497,015 - -0.6
497,015 - +0.5
497,015 - +0.1
497,133 + PfGW456L13_431 0.14 -0.6
497,157 - PfGW456L13_431 0.17 +0.8
497,189 + PfGW456L13_431 0.20 +2.3
497,394 - PfGW456L13_431 0.41 +1.0
497,394 - PfGW456L13_431 0.41 +0.5
497,394 - PfGW456L13_431 0.41 +1.0
497,395 + PfGW456L13_431 0.41 -0.7
497,409 + PfGW456L13_431 0.42 -1.1
497,409 + PfGW456L13_431 0.42 -0.6
497,409 + PfGW456L13_431 0.42 +0.8
497,409 + PfGW456L13_431 0.42 +0.6
497,410 - PfGW456L13_431 0.42 +0.2
497,526 + PfGW456L13_431 0.54 -0.5
497,527 - PfGW456L13_431 0.54 -0.7
497,527 - PfGW456L13_431 0.54 -0.3
497,527 - PfGW456L13_431 0.54 -1.6
497,700 + PfGW456L13_431 0.72 +0.3
497,764 + PfGW456L13_431 0.79 +0.1
497,934 + -1.3
497,943 + +1.3
497,944 - -0.7
497,998 + +0.1
498,025 - -0.8
498,057 - -0.2
498,220 + PfGW456L13_432 0.29 +0.6
498,220 + PfGW456L13_432 0.29 +1.3
498,221 - PfGW456L13_432 0.29 -0.8
498,221 - PfGW456L13_432 0.29 -0.3
498,221 - PfGW456L13_432 0.29 +1.3
498,660 + PfGW456L13_432 0.85 +0.5
498,661 - PfGW456L13_432 0.85 +1.4
498,727 + -0.5
498,727 + +1.2
498,727 + -0.9
498,727 + +0.0
498,728 - +0.3
498,728 - +0.2
498,752 + +1.4
498,752 + +0.9
498,753 - -2.3
498,753 - +0.6
498,789 - -0.9
498,828 + +1.3
498,829 - -0.1
498,829 - -0.3
498,829 - +0.9
498,897 + PfGW456L13_433 0.14 -2.0
498,979 - PfGW456L13_433 0.24 -0.2
498,995 + PfGW456L13_433 0.26 +0.0
498,995 + PfGW456L13_433 0.26 +0.1
498,995 + PfGW456L13_433 0.26 -0.8
498,995 + PfGW456L13_433 0.26 +0.8
498,995 + PfGW456L13_433 0.26 +1.7
498,997 + PfGW456L13_433 0.26 +0.1
498,997 + PfGW456L13_433 0.26 -0.8
499,148 + PfGW456L13_433 0.44 -0.1
499,173 - PfGW456L13_433 0.47 -0.2
499,173 - PfGW456L13_433 0.47 +1.3
499,232 + PfGW456L13_433 0.54 -0.2
499,232 + PfGW456L13_433 0.54 +0.6
499,232 + PfGW456L13_433 0.54 -0.6
499,512 + PfGW456L13_433 0.88 -0.1
499,513 - PfGW456L13_433 0.88 -0.5
499,513 - PfGW456L13_433 0.88 +0.2
499,619 - -0.3
499,625 + +0.1
499,626 - -0.2
499,693 + -1.4
499,693 + +2.3
499,693 + +0.4
499,693 + +0.9
499,693 + +0.5
499,693 + -0.5
499,694 - -1.1
499,694 - -0.4
499,694 - -0.5
499,694 - -0.4
499,694 - -1.1
499,694 - -0.0
499,694 - -0.5
499,694 - +1.0
499,694 - -2.1
499,725 + -1.2

Or see this region's nucleotide sequence