Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4293

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4291 and PfGW456L13_4292 are separated by 98 nucleotidesPfGW456L13_4292 and PfGW456L13_4293 overlap by 4 nucleotidesPfGW456L13_4293 and PfGW456L13_4294 are separated by 223 nucleotidesPfGW456L13_4294 and PfGW456L13_4295 are separated by 268 nucleotides PfGW456L13_4291 - L-tryptophan transporter (from data), at 4,807,060 to 4,808,463 _4291 PfGW456L13_4292 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data), at 4,808,562 to 4,809,416 _4292 PfGW456L13_4293 - Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data), at 4,809,413 to 4,810,078 _4293 PfGW456L13_4294 - GlcG protein, at 4,810,302 to 4,810,742 _4294 PfGW456L13_4295 - Glyoxylate carboligase (EC 4.1.1.47), at 4,811,011 to 4,812,786 _4295 Position (kb) 4809 4810 4811Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4808.469 kb on + strandat 4808.476 kb on + strandat 4808.476 kb on + strandat 4808.477 kb on - strandat 4808.477 kb on - strandat 4808.477 kb on - strandat 4808.477 kb on - strandat 4808.484 kb on - strandat 4808.606 kb on + strandat 4808.626 kb on + strandat 4808.752 kb on + strand, within PfGW456L13_4292at 4808.782 kb on + strand, within PfGW456L13_4292at 4808.783 kb on - strand, within PfGW456L13_4292at 4808.905 kb on + strand, within PfGW456L13_4292at 4808.905 kb on + strand, within PfGW456L13_4292at 4808.906 kb on - strand, within PfGW456L13_4292at 4808.906 kb on - strand, within PfGW456L13_4292at 4808.906 kb on - strand, within PfGW456L13_4292at 4809.325 kb on + strand, within PfGW456L13_4292at 4809.325 kb on + strand, within PfGW456L13_4292at 4809.368 kb on + strandat 4809.519 kb on + strand, within PfGW456L13_4293at 4809.519 kb on + strand, within PfGW456L13_4293at 4809.519 kb on + strand, within PfGW456L13_4293at 4809.563 kb on - strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.849 kb on + strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.850 kb on - strand, within PfGW456L13_4293at 4809.894 kb on + strand, within PfGW456L13_4293at 4809.894 kb on + strand, within PfGW456L13_4293at 4809.895 kb on - strand, within PfGW456L13_4293at 4809.926 kb on - strand, within PfGW456L13_4293at 4809.944 kb on - strand, within PfGW456L13_4293at 4810.021 kb on + strandat 4810.021 kb on + strandat 4810.021 kb on + strandat 4810.021 kb on + strandat 4810.021 kb on + strandat 4810.021 kb on + strandat 4810.022 kb on - strandat 4810.022 kb on - strandat 4810.022 kb on - strandat 4810.027 kb on + strandat 4810.027 kb on + strandat 4810.027 kb on + strandat 4810.028 kb on - strandat 4810.028 kb on - strandat 4810.028 kb on - strandat 4810.028 kb on - strandat 4810.028 kb on - strandat 4810.112 kb on - strandat 4810.120 kb on + strandat 4810.120 kb on + strandat 4810.121 kb on - strandat 4810.121 kb on - strandat 4810.121 kb on - strandat 4810.121 kb on - strandat 4810.230 kb on + strandat 4810.230 kb on + strandat 4810.230 kb on + strandat 4810.230 kb on + strandat 4810.231 kb on - strandat 4810.285 kb on - strandat 4810.648 kb on - strand, within PfGW456L13_4294at 4810.732 kb on - strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.954 kb on + strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strandat 4810.955 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
4,808,469 + -0.5
4,808,476 + +0.6
4,808,476 + +0.7
4,808,477 - +1.2
4,808,477 - +0.6
4,808,477 - +1.4
4,808,477 - +0.7
4,808,484 - +0.6
4,808,606 + +2.8
4,808,626 + +0.2
4,808,752 + PfGW456L13_4292 0.22 +0.5
4,808,782 + PfGW456L13_4292 0.26 +0.4
4,808,783 - PfGW456L13_4292 0.26 -0.0
4,808,905 + PfGW456L13_4292 0.40 +1.2
4,808,905 + PfGW456L13_4292 0.40 +1.7
4,808,906 - PfGW456L13_4292 0.40 +1.6
4,808,906 - PfGW456L13_4292 0.40 -0.5
4,808,906 - PfGW456L13_4292 0.40 +1.0
4,809,325 + PfGW456L13_4292 0.89 +0.6
4,809,325 + PfGW456L13_4292 0.89 +0.9
4,809,368 + +1.4
4,809,519 + PfGW456L13_4293 0.16 +0.6
4,809,519 + PfGW456L13_4293 0.16 -0.2
4,809,519 + PfGW456L13_4293 0.16 -0.2
4,809,563 - PfGW456L13_4293 0.23 -0.3
4,809,849 + PfGW456L13_4293 0.65 -2.4
4,809,849 + PfGW456L13_4293 0.65 +1.0
4,809,849 + PfGW456L13_4293 0.65 -0.5
4,809,849 + PfGW456L13_4293 0.65 -0.2
4,809,849 + PfGW456L13_4293 0.65 -0.2
4,809,849 + PfGW456L13_4293 0.65 -0.2
4,809,849 + PfGW456L13_4293 0.65 +0.6
4,809,850 - PfGW456L13_4293 0.66 -0.1
4,809,850 - PfGW456L13_4293 0.66 -1.8
4,809,850 - PfGW456L13_4293 0.66 -2.7
4,809,850 - PfGW456L13_4293 0.66 -0.0
4,809,850 - PfGW456L13_4293 0.66 -0.5
4,809,850 - PfGW456L13_4293 0.66 -0.3
4,809,850 - PfGW456L13_4293 0.66 +0.8
4,809,850 - PfGW456L13_4293 0.66 +0.2
4,809,850 - PfGW456L13_4293 0.66 +0.5
4,809,850 - PfGW456L13_4293 0.66 -0.4
4,809,850 - PfGW456L13_4293 0.66 +1.5
4,809,850 - PfGW456L13_4293 0.66 +0.2
4,809,894 + PfGW456L13_4293 0.72 +0.1
4,809,894 + PfGW456L13_4293 0.72 +0.8
4,809,895 - PfGW456L13_4293 0.72 -0.5
4,809,926 - PfGW456L13_4293 0.77 -0.1
4,809,944 - PfGW456L13_4293 0.80 +1.0
4,810,021 + +0.7
4,810,021 + -0.3
4,810,021 + -0.8
4,810,021 + -2.1
4,810,021 + +0.0
4,810,021 + +1.0
4,810,022 - +0.2
4,810,022 - -0.0
4,810,022 - +0.8
4,810,027 + -0.1
4,810,027 + -1.6
4,810,027 + +0.6
4,810,028 - -0.1
4,810,028 - -0.3
4,810,028 - +0.5
4,810,028 - -0.2
4,810,028 - -2.1
4,810,112 - +1.5
4,810,120 + -1.9
4,810,120 + -0.0
4,810,121 - -0.0
4,810,121 - -0.6
4,810,121 - +0.5
4,810,121 - +0.2
4,810,230 + -0.2
4,810,230 + +1.2
4,810,230 + -0.9
4,810,230 + +0.5
4,810,231 - +0.7
4,810,285 - +0.1
4,810,648 - PfGW456L13_4294 0.78 +1.0
4,810,732 - -0.2
4,810,954 + -0.0
4,810,954 + -0.3
4,810,954 + -0.8
4,810,954 + -1.8
4,810,954 + +0.4
4,810,954 + -0.1
4,810,954 + -0.0
4,810,954 + -0.6
4,810,954 + -0.2
4,810,954 + -1.2
4,810,954 + -0.7
4,810,954 + -0.7
4,810,954 + +0.7
4,810,954 + -1.3
4,810,954 + -0.9
4,810,954 + -0.7
4,810,954 + +0.3
4,810,954 + +0.0
4,810,954 + +0.1
4,810,954 + +0.3
4,810,954 + -0.6
4,810,954 + -0.6
4,810,954 + +0.1
4,810,954 + -0.4
4,810,954 + +2.8
4,810,955 - -0.3
4,810,955 - +0.4
4,810,955 - -0.1
4,810,955 - -0.8
4,810,955 - -0.2
4,810,955 - -2.4
4,810,955 - +0.5
4,810,955 - -1.6
4,810,955 - +0.1
4,810,955 - +1.3
4,810,955 - -1.3
4,810,955 - +0.9
4,810,955 - -0.5
4,810,955 - +0.8
4,810,955 - +0.1
4,810,955 - +1.1
4,810,955 - +1.2
4,810,955 - +0.1
4,810,955 - -0.9
4,810,955 - +0.4
4,810,955 - -1.1
4,810,955 - -0.0
4,810,955 - +1.0
4,810,955 - -0.0
4,810,955 - -1.4

Or see this region's nucleotide sequence