Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2925

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2924 and PfGW456L13_2925 overlap by 4 nucleotidesPfGW456L13_2925 and PfGW456L13_2926 are separated by 430 nucleotides PfGW456L13_2924 - Glutathione reductase (EC 1.8.1.7), at 3,260,400 to 3,261,758 _2924 PfGW456L13_2925 - Cointegrate resolution protein T, at 3,261,755 to 3,262,765 _2925 PfGW456L13_2926 - Cointegrate resolution protein S, at 3,263,196 to 3,264,134 _2926 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1 2at 3260.925 kb on + strand, within PfGW456L13_2924at 3260.925 kb on + strand, within PfGW456L13_2924at 3260.926 kb on - strand, within PfGW456L13_2924at 3260.985 kb on + strand, within PfGW456L13_2924at 3261.171 kb on + strand, within PfGW456L13_2924at 3261.171 kb on + strand, within PfGW456L13_2924at 3261.172 kb on - strand, within PfGW456L13_2924at 3261.267 kb on + strand, within PfGW456L13_2924at 3261.268 kb on - strand, within PfGW456L13_2924at 3261.402 kb on + strand, within PfGW456L13_2924at 3261.402 kb on + strand, within PfGW456L13_2924at 3261.402 kb on + strand, within PfGW456L13_2924at 3261.402 kb on + strand, within PfGW456L13_2924at 3261.402 kb on + strand, within PfGW456L13_2924at 3261.403 kb on - strand, within PfGW456L13_2924at 3261.403 kb on - strand, within PfGW456L13_2924at 3261.807 kb on - strandat 3261.807 kb on - strandat 3262.146 kb on - strand, within PfGW456L13_2925at 3262.146 kb on - strand, within PfGW456L13_2925at 3262.411 kb on - strand, within PfGW456L13_2925at 3262.630 kb on - strand, within PfGW456L13_2925at 3262.630 kb on - strand, within PfGW456L13_2925at 3262.677 kb on - strandat 3262.744 kb on + strandat 3262.745 kb on - strandat 3262.745 kb on - strandat 3262.748 kb on + strandat 3262.749 kb on - strandat 3262.864 kb on + strandat 3262.866 kb on + strandat 3262.897 kb on + strandat 3262.897 kb on + strandat 3262.901 kb on + strandat 3262.902 kb on - strandat 3262.935 kb on + strandat 3262.935 kb on + strandat 3262.935 kb on + strandat 3262.936 kb on - strandat 3262.936 kb on - strandat 3262.996 kb on + strandat 3263.048 kb on + strandat 3263.073 kb on + strandat 3263.167 kb on + strandat 3263.167 kb on + strandat 3263.167 kb on + strandat 3263.167 kb on + strandat 3263.168 kb on - strandat 3263.168 kb on - strandat 3263.195 kb on + strandat 3263.196 kb on - strandat 3263.214 kb on + strandat 3263.215 kb on - strandat 3263.215 kb on - strandat 3263.253 kb on + strandat 3263.329 kb on - strand, within PfGW456L13_2926at 3263.715 kb on + strand, within PfGW456L13_2926at 3263.716 kb on - strand, within PfGW456L13_2926at 3263.716 kb on - strand, within PfGW456L13_2926at 3263.720 kb on - strand, within PfGW456L13_2926at 3263.727 kb on - strand, within PfGW456L13_2926at 3263.760 kb on + strand, within PfGW456L13_2926at 3263.761 kb on - strand, within PfGW456L13_2926at 3263.761 kb on - strand, within PfGW456L13_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,260,925 + PfGW456L13_2924 0.39 -0.7
3,260,925 + PfGW456L13_2924 0.39 -1.4
3,260,926 - PfGW456L13_2924 0.39 +0.1
3,260,985 + PfGW456L13_2924 0.43 -0.2
3,261,171 + PfGW456L13_2924 0.57 +0.5
3,261,171 + PfGW456L13_2924 0.57 -0.4
3,261,172 - PfGW456L13_2924 0.57 +0.5
3,261,267 + PfGW456L13_2924 0.64 -0.5
3,261,268 - PfGW456L13_2924 0.64 +1.0
3,261,402 + PfGW456L13_2924 0.74 +0.6
3,261,402 + PfGW456L13_2924 0.74 -0.4
3,261,402 + PfGW456L13_2924 0.74 -1.0
3,261,402 + PfGW456L13_2924 0.74 +0.7
3,261,402 + PfGW456L13_2924 0.74 -1.1
3,261,403 - PfGW456L13_2924 0.74 -1.1
3,261,403 - PfGW456L13_2924 0.74 +1.0
3,261,807 - -1.2
3,261,807 - -0.6
3,262,146 - PfGW456L13_2925 0.39 -2.2
3,262,146 - PfGW456L13_2925 0.39 +2.5
3,262,411 - PfGW456L13_2925 0.65 +0.1
3,262,630 - PfGW456L13_2925 0.87 -0.8
3,262,630 - PfGW456L13_2925 0.87 -1.3
3,262,677 - +0.5
3,262,744 + -0.3
3,262,745 - +0.0
3,262,745 - -0.4
3,262,748 + -1.1
3,262,749 - -0.6
3,262,864 + +0.2
3,262,866 + -1.6
3,262,897 + +0.5
3,262,897 + -0.5
3,262,901 + -0.4
3,262,902 - +0.0
3,262,935 + +0.5
3,262,935 + +0.7
3,262,935 + +0.0
3,262,936 - +0.9
3,262,936 - -1.2
3,262,996 + +1.0
3,263,048 + -0.3
3,263,073 + -0.3
3,263,167 + -0.3
3,263,167 + +0.0
3,263,167 + -1.0
3,263,167 + -0.5
3,263,168 - +1.3
3,263,168 - -0.3
3,263,195 + -1.1
3,263,196 - -0.2
3,263,214 + -1.4
3,263,215 - +0.1
3,263,215 - +0.7
3,263,253 + +0.5
3,263,329 - PfGW456L13_2926 0.14 +0.7
3,263,715 + PfGW456L13_2926 0.55 -0.4
3,263,716 - PfGW456L13_2926 0.55 +0.2
3,263,716 - PfGW456L13_2926 0.55 -0.4
3,263,720 - PfGW456L13_2926 0.56 -0.7
3,263,727 - PfGW456L13_2926 0.57 +0.1
3,263,760 + PfGW456L13_2926 0.60 -0.2
3,263,761 - PfGW456L13_2926 0.60 +0.2
3,263,761 - PfGW456L13_2926 0.60 -0.3

Or see this region's nucleotide sequence