Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2176

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2175 and PfGW456L13_2176 overlap by 1 nucleotidesPfGW456L13_2176 and PfGW456L13_2177 are separated by 13 nucleotides PfGW456L13_2175 - Phosphoserine aminotransferase (EC 2.6.1.52), at 2,382,720 to 2,383,811 _2175 PfGW456L13_2176 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 2,383,811 to 2,384,905 _2176 PfGW456L13_2177 - Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57), at 2,384,919 to 2,386,031 _2177 Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2383.961 kb on + strand, within PfGW456L13_2176at 2383.961 kb on + strand, within PfGW456L13_2176at 2383.961 kb on + strand, within PfGW456L13_2176at 2383.961 kb on + strand, within PfGW456L13_2176at 2384.102 kb on + strand, within PfGW456L13_2176at 2384.102 kb on + strand, within PfGW456L13_2176at 2384.102 kb on + strand, within PfGW456L13_2176at 2384.593 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.780 kb on + strand, within PfGW456L13_2176at 2384.903 kb on + strandat 2384.973 kb on + strandat 2384.973 kb on + strandat 2385.032 kb on + strand, within PfGW456L13_2177at 2385.032 kb on + strand, within PfGW456L13_2177at 2385.243 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.516 kb on + strand, within PfGW456L13_2177at 2385.639 kb on + strand, within PfGW456L13_2177at 2385.682 kb on + strand, within PfGW456L13_2177at 2385.750 kb on + strand, within PfGW456L13_2177at 2385.750 kb on + strand, within PfGW456L13_2177at 2385.750 kb on + strand, within PfGW456L13_2177

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
2,383,961 + PfGW456L13_2176 0.14 -2.2
2,383,961 + PfGW456L13_2176 0.14 -2.5
2,383,961 + PfGW456L13_2176 0.14 -3.5
2,383,961 + PfGW456L13_2176 0.14 -3.2
2,384,102 + PfGW456L13_2176 0.27 -2.4
2,384,102 + PfGW456L13_2176 0.27 -3.5
2,384,102 + PfGW456L13_2176 0.27 -2.8
2,384,593 + PfGW456L13_2176 0.71 -3.0
2,384,780 + PfGW456L13_2176 0.88 -3.3
2,384,780 + PfGW456L13_2176 0.88 -3.0
2,384,780 + PfGW456L13_2176 0.88 -4.5
2,384,780 + PfGW456L13_2176 0.88 -2.5
2,384,780 + PfGW456L13_2176 0.88 -2.0
2,384,780 + PfGW456L13_2176 0.88 -2.6
2,384,780 + PfGW456L13_2176 0.88 -2.4
2,384,780 + PfGW456L13_2176 0.88 -1.7
2,384,780 + PfGW456L13_2176 0.88 -2.6
2,384,780 + PfGW456L13_2176 0.88 -3.9
2,384,780 + PfGW456L13_2176 0.88 -1.3
2,384,903 + -1.2
2,384,973 + -0.4
2,384,973 + -1.2
2,385,032 + PfGW456L13_2177 0.10 -1.6
2,385,032 + PfGW456L13_2177 0.10 -0.8
2,385,243 + PfGW456L13_2177 0.29 -1.2
2,385,516 + PfGW456L13_2177 0.54 +1.1
2,385,516 + PfGW456L13_2177 0.54 -0.6
2,385,516 + PfGW456L13_2177 0.54 -1.6
2,385,516 + PfGW456L13_2177 0.54 -0.2
2,385,516 + PfGW456L13_2177 0.54 -1.5
2,385,516 + PfGW456L13_2177 0.54 -1.2
2,385,516 + PfGW456L13_2177 0.54 -0.7
2,385,516 + PfGW456L13_2177 0.54 -2.1
2,385,516 + PfGW456L13_2177 0.54 +0.2
2,385,639 + PfGW456L13_2177 0.65 -0.1
2,385,682 + PfGW456L13_2177 0.69 -1.2
2,385,750 + PfGW456L13_2177 0.75 +0.8
2,385,750 + PfGW456L13_2177 0.75 +1.0
2,385,750 + PfGW456L13_2177 0.75 -0.6

Or see this region's nucleotide sequence