Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2172

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2170 and PfGW456L13_2171 are separated by 31 nucleotidesPfGW456L13_2171 and PfGW456L13_2172 are separated by 58 nucleotidesPfGW456L13_2172 and PfGW456L13_2173 are separated by 108 nucleotides PfGW456L13_2170 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 2,375,492 to 2,376,136 _2170 PfGW456L13_2171 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 2,376,168 to 2,376,866 _2171 PfGW456L13_2172 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 2,376,925 to 2,378,259 _2172 PfGW456L13_2173 - Methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 2,378,368 to 2,379,444 _2173 Position (kb) 2376 2377 2378 2379Strain fitness (log2 ratio) -2 -1 0 1 2at 2375.931 kb on + strand, within PfGW456L13_2170at 2375.931 kb on + strand, within PfGW456L13_2170at 2375.932 kb on - strand, within PfGW456L13_2170at 2376.157 kb on + strandat 2376.169 kb on + strandat 2376.170 kb on - strandat 2376.872 kb on - strandat 2376.872 kb on - strandat 2376.881 kb on - strandat 2376.926 kb on + strandat 2376.926 kb on + strandat 2376.926 kb on + strandat 2376.927 kb on - strandat 2376.927 kb on - strandat 2376.975 kb on + strandat 2376.975 kb on + strandat 2376.975 kb on + strandat 2376.975 kb on + strandat 2376.976 kb on - strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.979 kb on + strandat 2376.980 kb on - strandat 2376.980 kb on - strandat 2376.980 kb on - strandat 2376.980 kb on - strandat 2376.980 kb on - strandat 2376.980 kb on - strandat 2377.073 kb on + strand, within PfGW456L13_2172at 2377.073 kb on + strand, within PfGW456L13_2172at 2377.073 kb on + strand, within PfGW456L13_2172at 2377.074 kb on - strand, within PfGW456L13_2172at 2377.074 kb on - strand, within PfGW456L13_2172at 2377.074 kb on - strand, within PfGW456L13_2172at 2377.074 kb on - strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.075 kb on + strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.076 kb on - strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.077 kb on + strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.078 kb on - strand, within PfGW456L13_2172at 2377.097 kb on + strand, within PfGW456L13_2172at 2377.097 kb on + strand, within PfGW456L13_2172at 2377.098 kb on - strand, within PfGW456L13_2172at 2377.670 kb on + strand, within PfGW456L13_2172at 2377.671 kb on - strand, within PfGW456L13_2172at 2377.862 kb on + strand, within PfGW456L13_2172at 2377.862 kb on + strand, within PfGW456L13_2172at 2377.862 kb on + strandat 2377.862 kb on + strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2377.863 kb on - strand, within PfGW456L13_2172at 2378.106 kb on + strand, within PfGW456L13_2172at 2378.227 kb on + strandat 2378.228 kb on - strandat 2378.299 kb on + strandat 2378.299 kb on + strandat 2378.300 kb on - strandat 2378.300 kb on - strandat 2378.301 kb on + strandat 2378.302 kb on - strandat 2378.329 kb on + strandat 2378.330 kb on - strandat 2378.330 kb on - strandat 2378.330 kb on - strandat 2378.330 kb on - strandat 2378.331 kb on + strandat 2378.331 kb on + strandat 2378.332 kb on - strandat 2378.332 kb on - strandat 2378.399 kb on + strandat 2378.479 kb on + strand, within PfGW456L13_2173at 2378.561 kb on - strand, within PfGW456L13_2173at 2378.612 kb on - strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.954 kb on - strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.061 kb on - strand, within PfGW456L13_2173at 2379.061 kb on - strand, within PfGW456L13_2173at 2379.082 kb on - strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
2,375,931 + PfGW456L13_2170 0.68 -1.0
2,375,931 + PfGW456L13_2170 0.68 -0.8
2,375,932 - PfGW456L13_2170 0.68 -0.5
2,376,157 + +0.2
2,376,169 + +0.1
2,376,170 - -0.1
2,376,872 - -0.5
2,376,872 - -0.3
2,376,881 - +1.2
2,376,926 + +0.5
2,376,926 + -0.2
2,376,926 + -0.0
2,376,927 - -1.5
2,376,927 - -0.5
2,376,975 + +0.5
2,376,975 + +0.7
2,376,975 + -0.3
2,376,975 + -0.4
2,376,976 - -0.6
2,376,979 + +0.6
2,376,979 + +0.4
2,376,979 + -1.3
2,376,979 + -0.5
2,376,979 + -0.2
2,376,979 + +0.5
2,376,979 + +0.6
2,376,979 + +0.8
2,376,979 + -0.5
2,376,979 + -1.2
2,376,979 + -1.2
2,376,979 + -0.3
2,376,980 - -0.7
2,376,980 - +1.0
2,376,980 - +0.3
2,376,980 - +0.8
2,376,980 - +0.3
2,376,980 - -2.0
2,377,073 + PfGW456L13_2172 0.11 -0.7
2,377,073 + PfGW456L13_2172 0.11 +0.8
2,377,073 + PfGW456L13_2172 0.11 -0.7
2,377,074 - PfGW456L13_2172 0.11 -0.2
2,377,074 - PfGW456L13_2172 0.11 -2.1
2,377,074 - PfGW456L13_2172 0.11 -2.2
2,377,074 - PfGW456L13_2172 0.11 -1.6
2,377,075 + PfGW456L13_2172 0.11 -0.4
2,377,075 + PfGW456L13_2172 0.11 -0.2
2,377,075 + PfGW456L13_2172 0.11 -1.5
2,377,075 + PfGW456L13_2172 0.11 -0.8
2,377,075 + PfGW456L13_2172 0.11 -1.2
2,377,075 + PfGW456L13_2172 0.11 -1.2
2,377,075 + PfGW456L13_2172 0.11 -1.1
2,377,076 - PfGW456L13_2172 0.11 -2.0
2,377,076 - PfGW456L13_2172 0.11 +0.8
2,377,076 - PfGW456L13_2172 0.11 +0.3
2,377,076 - PfGW456L13_2172 0.11 -2.1
2,377,076 - PfGW456L13_2172 0.11 +0.8
2,377,076 - PfGW456L13_2172 0.11 -2.1
2,377,077 + PfGW456L13_2172 0.11 -0.4
2,377,077 + PfGW456L13_2172 0.11 +0.9
2,377,077 + PfGW456L13_2172 0.11 -0.0
2,377,077 + PfGW456L13_2172 0.11 -1.0
2,377,077 + PfGW456L13_2172 0.11 +0.7
2,377,077 + PfGW456L13_2172 0.11 +0.8
2,377,077 + PfGW456L13_2172 0.11 -0.8
2,377,077 + PfGW456L13_2172 0.11 -1.2
2,377,077 + PfGW456L13_2172 0.11 -0.4
2,377,077 + PfGW456L13_2172 0.11 -1.0
2,377,077 + PfGW456L13_2172 0.11 -2.1
2,377,078 - PfGW456L13_2172 0.11 -0.2
2,377,078 - PfGW456L13_2172 0.11 -1.1
2,377,078 - PfGW456L13_2172 0.11 +0.0
2,377,078 - PfGW456L13_2172 0.11 +1.1
2,377,078 - PfGW456L13_2172 0.11 -1.2
2,377,078 - PfGW456L13_2172 0.11 -2.1
2,377,097 + PfGW456L13_2172 0.13 +1.2
2,377,097 + PfGW456L13_2172 0.13 +0.4
2,377,098 - PfGW456L13_2172 0.13 -1.5
2,377,670 + PfGW456L13_2172 0.56 -0.2
2,377,671 - PfGW456L13_2172 0.56 -0.0
2,377,862 + PfGW456L13_2172 0.70 -1.5
2,377,862 + PfGW456L13_2172 0.70 -1.5
2,377,862 + -0.2
2,377,862 + PfGW456L13_2172 0.70 +1.2
2,377,863 - PfGW456L13_2172 0.70 -1.2
2,377,863 - PfGW456L13_2172 0.70 +0.1
2,377,863 - PfGW456L13_2172 0.70 -0.1
2,377,863 - PfGW456L13_2172 0.70 -1.2
2,377,863 - PfGW456L13_2172 0.70 +0.8
2,377,863 - PfGW456L13_2172 0.70 -0.4
2,377,863 - PfGW456L13_2172 0.70 +0.3
2,377,863 - PfGW456L13_2172 0.70 -0.3
2,377,863 - PfGW456L13_2172 0.70 +0.7
2,377,863 - PfGW456L13_2172 0.70 -1.5
2,377,863 - PfGW456L13_2172 0.70 -0.7
2,377,863 - PfGW456L13_2172 0.70 -0.7
2,377,863 - PfGW456L13_2172 0.70 -0.6
2,378,106 + PfGW456L13_2172 0.88 -0.5
2,378,227 + +0.7
2,378,228 - -0.2
2,378,299 + +0.5
2,378,299 + +2.1
2,378,300 - +0.2
2,378,300 - -0.5
2,378,301 + +0.1
2,378,302 - +0.8
2,378,329 + -1.1
2,378,330 - +1.1
2,378,330 - -0.9
2,378,330 - -0.4
2,378,330 - +0.6
2,378,331 + +0.0
2,378,331 + -0.2
2,378,332 - -0.7
2,378,332 - +0.5
2,378,399 + -0.6
2,378,479 + PfGW456L13_2173 0.10 -0.4
2,378,561 - PfGW456L13_2173 0.18 -0.2
2,378,612 - PfGW456L13_2173 0.23 -0.4
2,378,953 + PfGW456L13_2173 0.54 -0.5
2,378,953 + PfGW456L13_2173 0.54 -1.2
2,378,953 + PfGW456L13_2173 0.54 +0.6
2,378,953 + PfGW456L13_2173 0.54 -0.6
2,378,953 + PfGW456L13_2173 0.54 +1.1
2,378,953 + PfGW456L13_2173 0.54 -0.4
2,378,953 + PfGW456L13_2173 0.54 +0.2
2,378,954 - PfGW456L13_2173 0.54 -1.6
2,379,060 + PfGW456L13_2173 0.64 -0.5
2,379,060 + PfGW456L13_2173 0.64 +0.1
2,379,060 + PfGW456L13_2173 0.64 -0.4
2,379,061 - PfGW456L13_2173 0.64 +0.2
2,379,061 - PfGW456L13_2173 0.64 -0.9
2,379,082 - PfGW456L13_2173 0.66 -0.9
2,379,148 + PfGW456L13_2173 0.72 -0.7
2,379,148 + PfGW456L13_2173 0.72 +0.4
2,379,148 + PfGW456L13_2173 0.72 +0.3
2,379,148 + PfGW456L13_2173 0.72 -0.6
2,379,148 + PfGW456L13_2173 0.72 -0.2
2,379,148 + PfGW456L13_2173 0.72 -1.7
2,379,148 + PfGW456L13_2173 0.72 -1.3
2,379,148 + PfGW456L13_2173 0.72 -1.1
2,379,149 - PfGW456L13_2173 0.73 -0.1
2,379,149 - PfGW456L13_2173 0.73 -0.7
2,379,149 - PfGW456L13_2173 0.73 -0.0

Or see this region's nucleotide sequence