Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1691

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1688 and PfGW456L13_1689 are separated by 235 nucleotidesPfGW456L13_1689 and PfGW456L13_1690 overlap by 4 nucleotidesPfGW456L13_1690 and PfGW456L13_1691 are separated by 3 nucleotidesPfGW456L13_1691 and PfGW456L13_1692 are separated by 305 nucleotides PfGW456L13_1688 - Predicted ATPase related to phosphate starvation-inducible protein PhoH, at 1,861,175 to 1,862,569 _1688 PfGW456L13_1689 - Molybdenum cofactor biosynthesis protein MoaC, at 1,862,805 to 1,863,278 _1689 PfGW456L13_1690 - Molybdenum cofactor biosynthesis protein MoaD, at 1,863,275 to 1,863,517 _1690 PfGW456L13_1691 - Molybdenum cofactor biosynthesis protein MoaE, at 1,863,521 to 1,863,973 _1691 PfGW456L13_1692 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 1,864,279 to 1,865,055 _1692 Position (kb) 1863 1864Strain fitness (log2 ratio) -2 -1 0 1 2at 1862.550 kb on - strandat 1862.567 kb on + strandat 1862.567 kb on + strandat 1862.567 kb on + strandat 1862.568 kb on - strandat 1862.568 kb on - strandat 1862.568 kb on - strandat 1862.568 kb on - strandat 1862.568 kb on - strandat 1862.620 kb on + strandat 1862.620 kb on + strandat 1862.620 kb on + strandat 1862.621 kb on - strandat 1862.773 kb on + strandat 1862.773 kb on + strandat 1862.773 kb on + strandat 1862.774 kb on - strandat 1862.774 kb on - strandat 1862.798 kb on + strandat 1862.798 kb on + strandat 1862.798 kb on + strandat 1863.174 kb on + strand, within PfGW456L13_1689at 1863.174 kb on + strand, within PfGW456L13_1689at 1863.174 kb on + strand, within PfGW456L13_1689at 1863.175 kb on - strand, within PfGW456L13_1689at 1863.175 kb on - strand, within PfGW456L13_1689at 1863.175 kb on - strand, within PfGW456L13_1689at 1863.175 kb on - strand, within PfGW456L13_1689at 1863.339 kb on + strand, within PfGW456L13_1690at 1863.340 kb on - strand, within PfGW456L13_1690at 1863.340 kb on - strand, within PfGW456L13_1690at 1863.340 kb on - strand, within PfGW456L13_1690at 1863.678 kb on - strand, within PfGW456L13_1691at 1863.863 kb on + strand, within PfGW456L13_1691at 1864.036 kb on + strandat 1864.037 kb on - strandat 1864.047 kb on - strandat 1864.047 kb on - strandat 1864.158 kb on + strandat 1864.158 kb on + strandat 1864.159 kb on - strandat 1864.159 kb on - strandat 1864.176 kb on + strandat 1864.201 kb on + strandat 1864.432 kb on + strand, within PfGW456L13_1692at 1864.432 kb on + strand, within PfGW456L13_1692at 1864.433 kb on - strand, within PfGW456L13_1692at 1864.600 kb on + strand, within PfGW456L13_1692at 1864.600 kb on + strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.601 kb on - strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.603 kb on + strand, within PfGW456L13_1692at 1864.604 kb on - strand, within PfGW456L13_1692at 1864.604 kb on - strand, within PfGW456L13_1692at 1864.604 kb on - strand, within PfGW456L13_1692at 1864.780 kb on + strand, within PfGW456L13_1692at 1864.780 kb on + strand, within PfGW456L13_1692at 1864.780 kb on + strand, within PfGW456L13_1692at 1864.780 kb on + strand, within PfGW456L13_1692at 1864.781 kb on - strand, within PfGW456L13_1692at 1864.781 kb on - strand, within PfGW456L13_1692at 1864.871 kb on - strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.906 kb on + strand, within PfGW456L13_1692at 1864.907 kb on - strand, within PfGW456L13_1692at 1864.907 kb on - strand, within PfGW456L13_1692at 1864.907 kb on - strand, within PfGW456L13_1692at 1864.910 kb on + strand, within PfGW456L13_1692at 1864.910 kb on + strand, within PfGW456L13_1692at 1864.910 kb on + strand, within PfGW456L13_1692at 1864.911 kb on - strand, within PfGW456L13_1692at 1864.911 kb on - strand, within PfGW456L13_1692at 1864.911 kb on - strand, within PfGW456L13_1692at 1864.911 kb on - strand, within PfGW456L13_1692at 1864.911 kb on - strand, within PfGW456L13_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,862,550 - -0.7
1,862,567 + -0.2
1,862,567 + +0.3
1,862,567 + +0.3
1,862,568 - +1.0
1,862,568 - -0.2
1,862,568 - +0.2
1,862,568 - -0.2
1,862,568 - -0.2
1,862,620 + -1.4
1,862,620 + -0.2
1,862,620 + -0.4
1,862,621 - -0.1
1,862,773 + +0.2
1,862,773 + +0.1
1,862,773 + -0.2
1,862,774 - -0.9
1,862,774 - -0.3
1,862,798 + -0.4
1,862,798 + -0.1
1,862,798 + +0.4
1,863,174 + PfGW456L13_1689 0.78 -0.8
1,863,174 + PfGW456L13_1689 0.78 -2.1
1,863,174 + PfGW456L13_1689 0.78 +0.0
1,863,175 - PfGW456L13_1689 0.78 -1.3
1,863,175 - PfGW456L13_1689 0.78 +0.3
1,863,175 - PfGW456L13_1689 0.78 +0.1
1,863,175 - PfGW456L13_1689 0.78 +0.1
1,863,339 + PfGW456L13_1690 0.26 +1.0
1,863,340 - PfGW456L13_1690 0.27 -1.1
1,863,340 - PfGW456L13_1690 0.27 +0.0
1,863,340 - PfGW456L13_1690 0.27 -0.1
1,863,678 - PfGW456L13_1691 0.35 -0.9
1,863,863 + PfGW456L13_1691 0.75 -1.3
1,864,036 + -0.2
1,864,037 - -0.6
1,864,047 - +0.4
1,864,047 - +2.6
1,864,158 + +0.2
1,864,158 + +0.0
1,864,159 - +0.5
1,864,159 - -0.3
1,864,176 + +0.1
1,864,201 + +0.6
1,864,432 + PfGW456L13_1692 0.20 +1.0
1,864,432 + PfGW456L13_1692 0.20 -0.8
1,864,433 - PfGW456L13_1692 0.20 +0.4
1,864,600 + PfGW456L13_1692 0.41 +0.2
1,864,600 + PfGW456L13_1692 0.41 -1.0
1,864,601 - PfGW456L13_1692 0.41 +0.1
1,864,601 - PfGW456L13_1692 0.41 -1.3
1,864,601 - PfGW456L13_1692 0.41 +0.0
1,864,601 - PfGW456L13_1692 0.41 -1.1
1,864,601 - PfGW456L13_1692 0.41 -0.5
1,864,601 - PfGW456L13_1692 0.41 +0.4
1,864,603 + PfGW456L13_1692 0.42 -1.7
1,864,603 + PfGW456L13_1692 0.42 -0.6
1,864,603 + PfGW456L13_1692 0.42 +1.5
1,864,603 + PfGW456L13_1692 0.42 +0.6
1,864,603 + PfGW456L13_1692 0.42 -1.1
1,864,603 + PfGW456L13_1692 0.42 +0.4
1,864,604 - PfGW456L13_1692 0.42 -0.4
1,864,604 - PfGW456L13_1692 0.42 -0.3
1,864,604 - PfGW456L13_1692 0.42 -0.7
1,864,780 + PfGW456L13_1692 0.64 -1.1
1,864,780 + PfGW456L13_1692 0.64 +0.4
1,864,780 + PfGW456L13_1692 0.64 -0.8
1,864,780 + PfGW456L13_1692 0.64 -0.7
1,864,781 - PfGW456L13_1692 0.65 +0.4
1,864,781 - PfGW456L13_1692 0.65 -0.6
1,864,871 - PfGW456L13_1692 0.76 +0.2
1,864,906 + PfGW456L13_1692 0.81 -0.0
1,864,906 + PfGW456L13_1692 0.81 +0.8
1,864,906 + PfGW456L13_1692 0.81 +1.0
1,864,906 + PfGW456L13_1692 0.81 +0.3
1,864,906 + PfGW456L13_1692 0.81 -0.2
1,864,906 + PfGW456L13_1692 0.81 +0.5
1,864,906 + PfGW456L13_1692 0.81 +0.1
1,864,906 + PfGW456L13_1692 0.81 +1.0
1,864,907 - PfGW456L13_1692 0.81 +0.1
1,864,907 - PfGW456L13_1692 0.81 -1.2
1,864,907 - PfGW456L13_1692 0.81 -0.5
1,864,910 + PfGW456L13_1692 0.81 -0.1
1,864,910 + PfGW456L13_1692 0.81 +0.5
1,864,910 + PfGW456L13_1692 0.81 +0.2
1,864,911 - PfGW456L13_1692 0.81 -1.0
1,864,911 - PfGW456L13_1692 0.81 -1.2
1,864,911 - PfGW456L13_1692 0.81 -0.2
1,864,911 - PfGW456L13_1692 0.81 +0.0
1,864,911 - PfGW456L13_1692 0.81 +0.3

Or see this region's nucleotide sequence