Strain Fitness in Pseudomonas sp. RS175 around PFR28_04653

Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04652 and PFR28_04653 are separated by 15 nucleotidesPFR28_04653 and PFR28_04654 are separated by 200 nucleotides PFR28_04652: PFR28_04652 - Choline-sulfatase, at 5,311,072 to 5,312,604 _04652 PFR28_04653: PFR28_04653 - hypothetical protein, at 5,312,620 to 5,313,540 _04653 PFR28_04654: PFR28_04654 - C4-dicarboxylic acid transporter DauA, at 5,313,741 to 5,315,309 _04654 Position (kb) 5312 5313 5314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5311.681 kb on + strand, within PFR28_04652at 5311.682 kb on - strand, within PFR28_04652at 5311.682 kb on - strand, within PFR28_04652at 5311.682 kb on - strand, within PFR28_04652at 5311.682 kb on - strand, within PFR28_04652at 5311.711 kb on + strand, within PFR28_04652at 5311.711 kb on + strand, within PFR28_04652at 5311.711 kb on + strand, within PFR28_04652at 5311.711 kb on + strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.712 kb on - strand, within PFR28_04652at 5311.792 kb on + strand, within PFR28_04652at 5311.792 kb on + strand, within PFR28_04652at 5311.793 kb on - strand, within PFR28_04652at 5311.793 kb on - strand, within PFR28_04652at 5311.793 kb on - strand, within PFR28_04652at 5311.793 kb on - strand, within PFR28_04652at 5311.867 kb on + strand, within PFR28_04652at 5311.867 kb on + strand, within PFR28_04652at 5311.867 kb on + strand, within PFR28_04652at 5311.867 kb on + strand, within PFR28_04652at 5311.868 kb on - strand, within PFR28_04652at 5311.868 kb on - strand, within PFR28_04652at 5311.868 kb on - strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.212 kb on + strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.213 kb on - strand, within PFR28_04652at 5312.275 kb on + strand, within PFR28_04652at 5312.275 kb on + strand, within PFR28_04652at 5312.275 kb on + strand, within PFR28_04652at 5312.275 kb on + strand, within PFR28_04652at 5312.276 kb on - strand, within PFR28_04652at 5312.276 kb on - strand, within PFR28_04652at 5312.276 kb on - strand, within PFR28_04652at 5312.276 kb on - strand, within PFR28_04652at 5312.276 kb on - strand, within PFR28_04652at 5312.366 kb on + strand, within PFR28_04652at 5312.366 kb on + strand, within PFR28_04652at 5312.366 kb on + strand, within PFR28_04652at 5312.366 kb on + strand, within PFR28_04652at 5312.367 kb on - strand, within PFR28_04652at 5312.367 kb on - strand, within PFR28_04652at 5312.367 kb on - strand, within PFR28_04652at 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.530 kb on + strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.531 kb on - strandat 5312.607 kb on + strandat 5312.607 kb on + strandat 5312.607 kb on + strandat 5312.608 kb on - strandat 5312.608 kb on - strandat 5312.782 kb on + strand, within PFR28_04653at 5312.782 kb on + strand, within PFR28_04653at 5312.782 kb on + strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.783 kb on - strand, within PFR28_04653at 5312.800 kb on - strand, within PFR28_04653at 5312.890 kb on + strand, within PFR28_04653at 5312.890 kb on + strand, within PFR28_04653at 5312.890 kb on + strand, within PFR28_04653at 5312.890 kb on + strand, within PFR28_04653at 5312.891 kb on - strand, within PFR28_04653at 5312.891 kb on - strand, within PFR28_04653at 5312.891 kb on - strand, within PFR28_04653at 5312.975 kb on - strand, within PFR28_04653at 5312.975 kb on - strand, within PFR28_04653at 5312.997 kb on + strand, within PFR28_04653at 5312.997 kb on + strand, within PFR28_04653at 5312.997 kb on + strand, within PFR28_04653at 5312.998 kb on - strand, within PFR28_04653at 5313.046 kb on + strand, within PFR28_04653at 5313.250 kb on + strand, within PFR28_04653at 5313.250 kb on + strand, within PFR28_04653at 5313.250 kb on + strand, within PFR28_04653at 5313.251 kb on - strand, within PFR28_04653at 5313.251 kb on - strand, within PFR28_04653at 5313.251 kb on - strand, within PFR28_04653at 5313.251 kb on - strand, within PFR28_04653at 5313.251 kb on - strand, within PFR28_04653at 5313.271 kb on + strand, within PFR28_04653at 5313.272 kb on - strand, within PFR28_04653at 5313.272 kb on - strand, within PFR28_04653at 5313.295 kb on + strand, within PFR28_04653at 5313.295 kb on + strand, within PFR28_04653at 5313.295 kb on + strand, within PFR28_04653at 5313.295 kb on + strand, within PFR28_04653at 5313.295 kb on + strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.296 kb on - strand, within PFR28_04653at 5313.297 kb on + strand, within PFR28_04653at 5313.316 kb on + strand, within PFR28_04653at 5313.538 kb on + strandat 5313.539 kb on - strandat 5313.539 kb on - strandat 5313.539 kb on - strandat 5313.539 kb on - strandat 5313.539 kb on - strandat 5313.654 kb on - strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.672 kb on + strandat 5313.673 kb on - strandat 5313.673 kb on - strandat 5313.673 kb on - strandat 5313.673 kb on - strandat 5313.708 kb on + strandat 5313.903 kb on + strand, within PFR28_04654at 5313.903 kb on + strand, within PFR28_04654at 5313.904 kb on - strand, within PFR28_04654at 5313.912 kb on + strand, within PFR28_04654at 5313.912 kb on + strand, within PFR28_04654at 5313.913 kb on - strand, within PFR28_04654at 5313.913 kb on - strand, within PFR28_04654at 5314.005 kb on + strand, within PFR28_04654at 5314.005 kb on + strand, within PFR28_04654at 5314.005 kb on + strand, within PFR28_04654at 5314.006 kb on - strand, within PFR28_04654at 5314.006 kb on - strand, within PFR28_04654at 5314.006 kb on - strand, within PFR28_04654at 5314.006 kb on - strand, within PFR28_04654at 5314.006 kb on - strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.047 kb on + strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.048 kb on - strand, within PFR28_04654at 5314.075 kb on + strand, within PFR28_04654at 5314.375 kb on + strand, within PFR28_04654at 5314.501 kb on + strand, within PFR28_04654at 5314.502 kb on - strand, within PFR28_04654

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 2.5 mM
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5,311,681 + PFR28_04652 0.40 -1.6
5,311,682 - PFR28_04652 0.40 +1.9
5,311,682 - PFR28_04652 0.40 +0.6
5,311,682 - PFR28_04652 0.40 +0.0
5,311,682 - PFR28_04652 0.40 -2.0
5,311,711 + PFR28_04652 0.42 +0.9
5,311,711 + PFR28_04652 0.42 -0.1
5,311,711 + PFR28_04652 0.42 +0.7
5,311,711 + PFR28_04652 0.42 -0.3
5,311,712 - PFR28_04652 0.42 +0.4
5,311,712 - PFR28_04652 0.42 -0.4
5,311,712 - PFR28_04652 0.42 -0.7
5,311,712 - PFR28_04652 0.42 +1.6
5,311,712 - PFR28_04652 0.42 +0.7
5,311,712 - PFR28_04652 0.42 +1.8
5,311,792 + PFR28_04652 0.47 +1.0
5,311,792 + PFR28_04652 0.47 +0.7
5,311,793 - PFR28_04652 0.47 +0.4
5,311,793 - PFR28_04652 0.47 +0.2
5,311,793 - PFR28_04652 0.47 +1.2
5,311,793 - PFR28_04652 0.47 +0.3
5,311,867 + PFR28_04652 0.52 +0.3
5,311,867 + PFR28_04652 0.52 -0.1
5,311,867 + PFR28_04652 0.52 +0.7
5,311,867 + PFR28_04652 0.52 +0.3
5,311,868 - PFR28_04652 0.52 +0.8
5,311,868 - PFR28_04652 0.52 -2.1
5,311,868 - PFR28_04652 0.52 +0.5
5,312,212 + PFR28_04652 0.74 +0.5
5,312,212 + PFR28_04652 0.74 -0.4
5,312,212 + PFR28_04652 0.74 +0.9
5,312,212 + PFR28_04652 0.74 -0.5
5,312,212 + PFR28_04652 0.74 -0.3
5,312,212 + PFR28_04652 0.74 -0.1
5,312,212 + PFR28_04652 0.74 +0.5
5,312,212 + PFR28_04652 0.74 -0.2
5,312,212 + PFR28_04652 0.74 -0.7
5,312,212 + PFR28_04652 0.74 +0.2
5,312,212 + PFR28_04652 0.74 -1.2
5,312,212 + PFR28_04652 0.74 +0.3
5,312,212 + PFR28_04652 0.74 +0.3
5,312,212 + PFR28_04652 0.74 +1.5
5,312,212 + PFR28_04652 0.74 +1.2
5,312,212 + PFR28_04652 0.74 -0.3
5,312,212 + PFR28_04652 0.74 +0.1
5,312,212 + PFR28_04652 0.74 -1.9
5,312,213 - PFR28_04652 0.74 +1.1
5,312,213 - PFR28_04652 0.74 +1.2
5,312,213 - PFR28_04652 0.74 -0.8
5,312,213 - PFR28_04652 0.74 -0.2
5,312,213 - PFR28_04652 0.74 -0.6
5,312,213 - PFR28_04652 0.74 +1.6
5,312,213 - PFR28_04652 0.74 -0.1
5,312,213 - PFR28_04652 0.74 +0.4
5,312,213 - PFR28_04652 0.74 +0.7
5,312,275 + PFR28_04652 0.78 -1.7
5,312,275 + PFR28_04652 0.78 -0.6
5,312,275 + PFR28_04652 0.78 -0.2
5,312,275 + PFR28_04652 0.78 -0.8
5,312,276 - PFR28_04652 0.79 -1.7
5,312,276 - PFR28_04652 0.79 +1.0
5,312,276 - PFR28_04652 0.79 +1.2
5,312,276 - PFR28_04652 0.79 -0.2
5,312,276 - PFR28_04652 0.79 -0.6
5,312,366 + PFR28_04652 0.84 +1.6
5,312,366 + PFR28_04652 0.84 +0.6
5,312,366 + PFR28_04652 0.84 -1.6
5,312,366 + PFR28_04652 0.84 +0.8
5,312,367 - PFR28_04652 0.84 +0.9
5,312,367 - PFR28_04652 0.84 -0.4
5,312,367 - PFR28_04652 0.84 +1.0
5,312,530 + -0.1
5,312,530 + +0.1
5,312,530 + -1.4
5,312,530 + -0.5
5,312,530 + -1.0
5,312,530 + +0.1
5,312,530 + +0.9
5,312,530 + +0.6
5,312,530 + +0.2
5,312,530 + +0.4
5,312,531 - -0.9
5,312,531 - -1.0
5,312,531 - -1.0
5,312,531 - -0.2
5,312,531 - +0.4
5,312,531 - +2.5
5,312,531 - -0.1
5,312,531 - -0.9
5,312,607 + -2.1
5,312,607 + -0.4
5,312,607 + +0.3
5,312,608 - +0.8
5,312,608 - -0.7
5,312,782 + PFR28_04653 0.18 -1.0
5,312,782 + PFR28_04653 0.18 -0.9
5,312,782 + PFR28_04653 0.18 +0.0
5,312,783 - PFR28_04653 0.18 -0.4
5,312,783 - PFR28_04653 0.18 +1.7
5,312,783 - PFR28_04653 0.18 -2.4
5,312,783 - PFR28_04653 0.18 -0.1
5,312,783 - PFR28_04653 0.18 -0.0
5,312,783 - PFR28_04653 0.18 -0.8
5,312,800 - PFR28_04653 0.20 -0.3
5,312,890 + PFR28_04653 0.29 -0.2
5,312,890 + PFR28_04653 0.29 +1.0
5,312,890 + PFR28_04653 0.29 +0.2
5,312,890 + PFR28_04653 0.29 -3.0
5,312,891 - PFR28_04653 0.29 +0.1
5,312,891 - PFR28_04653 0.29 +0.6
5,312,891 - PFR28_04653 0.29 -0.5
5,312,975 - PFR28_04653 0.39 +0.4
5,312,975 - PFR28_04653 0.39 +1.1
5,312,997 + PFR28_04653 0.41 +0.5
5,312,997 + PFR28_04653 0.41 +0.2
5,312,997 + PFR28_04653 0.41 -1.5
5,312,998 - PFR28_04653 0.41 -0.1
5,313,046 + PFR28_04653 0.46 +0.7
5,313,250 + PFR28_04653 0.68 +0.4
5,313,250 + PFR28_04653 0.68 +0.4
5,313,250 + PFR28_04653 0.68 -0.8
5,313,251 - PFR28_04653 0.69 +1.0
5,313,251 - PFR28_04653 0.69 -2.2
5,313,251 - PFR28_04653 0.69 -0.1
5,313,251 - PFR28_04653 0.69 +1.5
5,313,251 - PFR28_04653 0.69 +1.4
5,313,271 + PFR28_04653 0.71 -1.7
5,313,272 - PFR28_04653 0.71 -0.7
5,313,272 - PFR28_04653 0.71 +0.1
5,313,295 + PFR28_04653 0.73 +0.3
5,313,295 + PFR28_04653 0.73 -1.7
5,313,295 + PFR28_04653 0.73 -2.2
5,313,295 + PFR28_04653 0.73 +1.7
5,313,295 + PFR28_04653 0.73 +1.4
5,313,296 - PFR28_04653 0.73 +1.8
5,313,296 - PFR28_04653 0.73 -0.2
5,313,296 - PFR28_04653 0.73 -2.3
5,313,296 - PFR28_04653 0.73 -1.7
5,313,296 - PFR28_04653 0.73 +0.6
5,313,296 - PFR28_04653 0.73 +0.8
5,313,296 - PFR28_04653 0.73 -1.9
5,313,297 + PFR28_04653 0.74 -0.4
5,313,316 + PFR28_04653 0.76 +0.7
5,313,538 + -0.7
5,313,539 - -0.0
5,313,539 - +0.0
5,313,539 - +0.9
5,313,539 - -0.6
5,313,539 - -2.7
5,313,654 - +1.0
5,313,672 + +1.6
5,313,672 + -0.2
5,313,672 + +1.1
5,313,672 + -0.2
5,313,672 + +1.1
5,313,672 + -0.2
5,313,672 + +1.3
5,313,672 + +0.0
5,313,672 + +0.2
5,313,672 + -1.0
5,313,673 - -3.3
5,313,673 - +0.7
5,313,673 - +0.2
5,313,673 - -1.0
5,313,708 + -0.7
5,313,903 + PFR28_04654 0.10 -1.4
5,313,903 + PFR28_04654 0.10 -0.5
5,313,904 - PFR28_04654 0.10 -0.2
5,313,912 + PFR28_04654 0.11 +0.8
5,313,912 + PFR28_04654 0.11 +0.0
5,313,913 - PFR28_04654 0.11 -0.7
5,313,913 - PFR28_04654 0.11 -0.6
5,314,005 + PFR28_04654 0.17 -0.4
5,314,005 + PFR28_04654 0.17 +1.4
5,314,005 + PFR28_04654 0.17 +0.4
5,314,006 - PFR28_04654 0.17 +1.2
5,314,006 - PFR28_04654 0.17 +1.7
5,314,006 - PFR28_04654 0.17 -0.1
5,314,006 - PFR28_04654 0.17 -1.5
5,314,006 - PFR28_04654 0.17 -0.1
5,314,047 + PFR28_04654 0.20 +0.8
5,314,047 + PFR28_04654 0.20 +0.2
5,314,047 + PFR28_04654 0.20 -0.2
5,314,047 + PFR28_04654 0.20 +1.0
5,314,047 + PFR28_04654 0.20 -1.4
5,314,047 + PFR28_04654 0.20 -1.0
5,314,047 + PFR28_04654 0.20 -1.0
5,314,047 + PFR28_04654 0.20 +1.2
5,314,047 + PFR28_04654 0.20 +0.1
5,314,047 + PFR28_04654 0.20 +1.0
5,314,047 + PFR28_04654 0.20 -1.3
5,314,047 + PFR28_04654 0.20 -0.6
5,314,047 + PFR28_04654 0.20 +1.2
5,314,048 - PFR28_04654 0.20 -1.3
5,314,048 - PFR28_04654 0.20 +1.4
5,314,048 - PFR28_04654 0.20 +1.1
5,314,048 - PFR28_04654 0.20 -0.7
5,314,048 - PFR28_04654 0.20 +1.0
5,314,048 - PFR28_04654 0.20 +0.6
5,314,075 + PFR28_04654 0.21 +0.3
5,314,375 + PFR28_04654 0.40 +0.0
5,314,501 + PFR28_04654 0.48 -0.3
5,314,502 - PFR28_04654 0.49 -0.7

Or see this region's nucleotide sequence