Strain Fitness in Pseudomonas sp. RS175 around PFR28_04651

Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 2.5 mM
5,309,059	+		PFR28_04649	0.44	-0.7
5,309,069	+		PFR28_04649	0.47	+1.3
5,309,069	+		PFR28_04649	0.47	-0.6
5,309,069	+		PFR28_04649	0.47	+0.0
5,309,069	+		PFR28_04649	0.47	+1.1
5,309,069	+		PFR28_04649	0.47	+1.0
5,309,070	-		PFR28_04649	0.47	+0.9
5,309,070	-		PFR28_04649	0.47	-0.4
5,309,070	-		PFR28_04649	0.47	-0.7
5,309,070	-		PFR28_04649	0.47	+0.9
5,309,070	-		PFR28_04649	0.47	-0.1
5,309,213	+		PFR28_04649	0.90	-2.8
5,309,214	-				+0.5
5,309,214	-				-0.4
5,309,214	-				+1.2
5,309,228	+				-0.4
5,309,228	+				-1.3
5,309,228	+				+0.6
5,309,228	+				-0.4
5,309,305	+				-0.8
5,309,305	+				+0.4
5,309,305	+				+1.4
5,309,305	+				-0.4
5,309,305	+				+0.6
5,309,305	+				-1.1
5,309,305	+				-1.3
5,309,305	+				-1.5
5,309,305	+				-0.6
5,309,305	+				-2.7
5,309,305	+				-1.0
5,309,305	+				-0.4
5,309,305	+				+1.8
5,309,305	+				+0.4
5,309,305	+				-1.9
5,309,305	+				-0.0
5,309,305	+				-0.6
5,309,305	+				+1.2
5,309,305	+				+0.5
5,309,305	+				-0.7
5,309,305	+				+0.0
5,309,305	+				-3.3
5,309,305	+				-0.7
5,309,305	+				-0.7
5,309,306	-				+1.3
5,309,306	-				+0.8
5,309,306	-				-1.0
5,309,306	-				+3.1
5,309,306	-				+0.8
5,309,306	-				+0.5
5,309,306	-				+1.1
5,309,306	-				+0.2
5,309,306	-				-0.9
5,309,306	-				+2.5
5,309,306	-				+1.2
5,309,306	-				+0.3
5,309,306	-				-0.8
5,309,306	-				-0.8
5,309,306	-				+1.0
5,309,306	-				-1.3
5,309,306	-				-1.0
5,309,306	-				+0.5
5,309,306	-				-1.0
5,309,306	-				+1.1
5,309,306	-				+0.5
5,309,306	-				+0.4
5,309,306	-				-0.6
5,309,306	-				-1.6
5,309,306	-				-0.6
5,309,371	+				+0.3
5,309,371	+				-0.1
5,309,371	+				+0.2
5,309,371	+				-0.6
5,309,371	+				-0.1
5,309,371	+				-0.0
5,309,371	+				+0.3
5,309,372	-				-0.3
5,309,372	-				-1.4
5,309,372	-				+0.3
5,309,372	-				+1.2
5,309,372	-				-0.2
5,309,506	+		PFR28_04650	0.26	-0.5
5,309,506	+		PFR28_04650	0.26	-0.5
5,309,506	+		PFR28_04650	0.26	-1.3
5,309,507	-		PFR28_04650	0.27	+0.3
5,309,507	-		PFR28_04650	0.27	+0.7
5,309,507	-		PFR28_04650	0.27	+0.0
5,309,507	-		PFR28_04650	0.27	+1.3
5,309,507	-		PFR28_04650	0.27	-0.7
5,309,507	-		PFR28_04650	0.27	-1.6
5,309,822	-		PFR28_04650	0.74	+0.2
5,309,822	-		PFR28_04650	0.74	+0.4
5,309,822	-		PFR28_04650	0.74	-0.1
5,309,822	-		PFR28_04650	0.74	-0.4
5,310,043	+				+0.9
5,310,043	+				+0.6
5,310,043	+				+0.0
5,310,044	-				-3.1
5,310,152	+		PFR28_04651	0.13	+0.2
5,310,152	+		PFR28_04651	0.13	+0.5
5,310,152	+		PFR28_04651	0.13	-0.9
5,310,152	+		PFR28_04651	0.13	+0.7
5,310,152	+		PFR28_04651	0.13	-0.9
5,310,152	+		PFR28_04651	0.13	+0.2
5,310,152	+		PFR28_04651	0.13	+0.3
5,310,152	+		PFR28_04651	0.13	-1.8
5,310,152	+		PFR28_04651	0.13	+0.2
5,310,152	+		PFR28_04651	0.13	-1.8
5,310,152	+		PFR28_04651	0.13	+0.6
5,310,152	+		PFR28_04651	0.13	-0.0
5,310,152	+		PFR28_04651	0.13	+0.7
5,310,152	+		PFR28_04651	0.13	+0.0
5,310,152	+		PFR28_04651	0.13	-0.7
5,310,152	+		PFR28_04651	0.13	-1.3
5,310,152	+		PFR28_04651	0.13	+0.6
5,310,152	+		PFR28_04651	0.13	+1.5
5,310,152	+		PFR28_04651	0.13	-0.3
5,310,153	-		PFR28_04651	0.13	+2.5
5,310,153	-		PFR28_04651	0.13	+0.7
5,310,153	-		PFR28_04651	0.13	+0.6
5,310,153	-		PFR28_04651	0.13	-2.9
5,310,153	-		PFR28_04651	0.13	-0.7
5,310,153	-		PFR28_04651	0.13	-0.2
5,310,153	-		PFR28_04651	0.13	+0.1
5,310,153	-		PFR28_04651	0.13	+2.0
5,310,153	-		PFR28_04651	0.13	+0.2
5,310,153	-		PFR28_04651	0.13	+0.2
5,310,155	+		PFR28_04651	0.14	+0.2
5,310,156	-		PFR28_04651	0.14	+0.5
5,310,156	-		PFR28_04651	0.14	+0.9
5,310,214	+		PFR28_04651	0.20	+1.9
5,310,214	+		PFR28_04651	0.20	+2.2
5,310,215	-		PFR28_04651	0.20	+1.5
5,310,287	+		PFR28_04651	0.28	+1.5
5,310,287	+		PFR28_04651	0.28	+0.4
5,310,287	+		PFR28_04651	0.28	+0.6
5,310,287	+		PFR28_04651	0.28	-0.5
5,310,287	+		PFR28_04651	0.28	+0.2
5,310,287	+		PFR28_04651	0.28	-1.3
5,310,287	+		PFR28_04651	0.28	-0.1
5,310,287	+		PFR28_04651	0.28	-0.6
5,310,287	+		PFR28_04651	0.28	-0.6
5,310,287	+		PFR28_04651	0.28	+0.5
5,310,287	+		PFR28_04651	0.28	+1.1
5,310,287	+		PFR28_04651	0.28	-0.8
5,310,288	-		PFR28_04651	0.28	-1.7
5,310,288	-		PFR28_04651	0.28	-0.2
5,310,288	-		PFR28_04651	0.28	-0.1
5,310,288	-		PFR28_04651	0.28	-2.2
5,310,288	-		PFR28_04651	0.28	+0.4
5,310,288	-		PFR28_04651	0.28	+1.3
5,310,288	-		PFR28_04651	0.28	-0.6
5,310,288	-		PFR28_04651	0.28	-1.1
5,310,288	-		PFR28_04651	0.28	+0.7
5,310,378	+		PFR28_04651	0.37	+0.1
5,310,378	+		PFR28_04651	0.37	+0.9
5,310,379	-		PFR28_04651	0.37	+0.4
5,310,801	-		PFR28_04651	0.82	+0.8
5,310,971	+				-0.7
5,311,015	-				+1.5
5,311,015	-				+0.2
5,311,072	-				+2.5
5,311,153	+				+2.9
5,311,153	+				-1.1
5,311,153	+				-0.1
5,311,154	-				+0.5
5,311,154	-				-0.2
5,311,154	-				-0.1
5,311,154	-				+1.2
5,311,154	-				-0.7
5,311,154	-				-0.5
5,311,154	-				+0.4
5,311,225	+				-1.3
5,311,225	+				+0.8
5,311,226	-		PFR28_04652	0.10	+0.4
5,311,261	-		PFR28_04652	0.12	+2.3
5,311,280	+		PFR28_04652	0.14	+1.4
5,311,281	-		PFR28_04652	0.14	+0.1
5,311,300	+		PFR28_04652	0.15	+0.5
5,311,339	+		PFR28_04652	0.17	+0.1
5,311,339	+		PFR28_04652	0.17	+0.8
5,311,339	+		PFR28_04652	0.17	+0.9
5,311,339	+		PFR28_04652	0.17	-0.9
5,311,339	+		PFR28_04652	0.17	+0.3
5,311,339	+		PFR28_04652	0.17	-0.1
5,311,339	+		PFR28_04652	0.17	-0.5
5,311,340	-		PFR28_04652	0.17	+0.6
5,311,340	-		PFR28_04652	0.17	+1.1
5,311,340	-		PFR28_04652	0.17	+0.5
5,311,340	-		PFR28_04652	0.17	-0.5
5,311,340	-		PFR28_04652	0.17	-0.0
5,311,340	-		PFR28_04652	0.17	+1.5
5,311,348	+		PFR28_04652	0.18	+0.8
5,311,349	-		PFR28_04652	0.18	+0.8
5,311,349	-		PFR28_04652	0.18	+1.0
5,311,446	+		PFR28_04652	0.24	-1.8
5,311,446	+		PFR28_04652	0.24	+1.1
5,311,446	+		PFR28_04652	0.24	+1.2
5,311,446	+		PFR28_04652	0.24	+0.0
5,311,446	+		PFR28_04652	0.24	-0.2
5,311,446	+		PFR28_04652	0.24	-0.7
5,311,447	-		PFR28_04652	0.24	+0.7
5,311,447	-		PFR28_04652	0.24	+0.5
5,311,447	-		PFR28_04652	0.24	+0.2
5,311,447	-		PFR28_04652	0.24	+1.6
5,311,447	-		PFR28_04652	0.24	+0.8
5,311,447	-		PFR28_04652	0.24	+1.8
5,311,447	-		PFR28_04652	0.24	+1.2
5,311,450	+		PFR28_04652	0.25	-0.4
5,311,510	+		PFR28_04652	0.29	-0.7
5,311,510	+		PFR28_04652	0.29	+0.1
5,311,550	+		PFR28_04652	0.31	+0.9
5,311,551	-		PFR28_04652	0.31	+0.6
5,311,603	+		PFR28_04652	0.35	-0.6
5,311,603	+		PFR28_04652	0.35	+0.8
5,311,603	+		PFR28_04652	0.35	-2.4
5,311,604	-		PFR28_04652	0.35	+1.4
5,311,604	-		PFR28_04652	0.35	-0.1
5,311,604	-		PFR28_04652	0.35	-0.3
5,311,604	-		PFR28_04652	0.35	-0.4
5,311,681	+		PFR28_04652	0.40	-1.6
5,311,682	-		PFR28_04652	0.40	+1.9
5,311,682	-		PFR28_04652	0.40	+0.6
5,311,682	-		PFR28_04652	0.40	+0.0
5,311,682	-		PFR28_04652	0.40	-2.0
5,311,711	+		PFR28_04652	0.42	+0.9
5,311,711	+		PFR28_04652	0.42	-0.1
5,311,711	+		PFR28_04652	0.42	+0.7
5,311,711	+		PFR28_04652	0.42	-0.3
5,311,712	-		PFR28_04652	0.42	+0.4
5,311,712	-		PFR28_04652	0.42	-0.4
5,311,712	-		PFR28_04652	0.42	-0.7
5,311,712	-		PFR28_04652	0.42	+1.6
5,311,712	-		PFR28_04652	0.42	+0.7
5,311,712	-		PFR28_04652	0.42	+1.8
5,311,792	+		PFR28_04652	0.47	+1.0
5,311,792	+		PFR28_04652	0.47	+0.7
5,311,793	-		PFR28_04652	0.47	+0.4
5,311,793	-		PFR28_04652	0.47	+0.2
5,311,793	-		PFR28_04652	0.47	+1.2
5,311,793	-		PFR28_04652	0.47	+0.3
5,311,867	+		PFR28_04652	0.52	+0.3
5,311,867	+		PFR28_04652	0.52	-0.1
5,311,867	+		PFR28_04652	0.52	+0.7
5,311,867	+		PFR28_04652	0.52	+0.3
5,311,868	-		PFR28_04652	0.52	+0.8
5,311,868	-		PFR28_04652	0.52	-2.1
5,311,868	-		PFR28_04652	0.52	+0.5