Strain Fitness in Pseudomonas sp. RS175 around PFR28_00713

Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00712 and PFR28_00713 overlap by 4 nucleotidesPFR28_00713 and PFR28_00714 are separated by 122 nucleotides PFR28_00712: PFR28_00712 - Ribonuclease D, at 753,370 to 754,503 _00712 PFR28_00713: PFR28_00713 - Protein YcgL, at 754,500 to 754,793 _00713 PFR28_00714: PFR28_00714 - Glyoxylate/hydroxypyruvate reductase A, at 754,916 to 755,848 _00714 Position (kb) 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 753.558 kb on + strand, within PFR28_00712at 753.559 kb on - strand, within PFR28_00712at 753.700 kb on + strand, within PFR28_00712at 753.700 kb on + strand, within PFR28_00712at 753.700 kb on + strand, within PFR28_00712at 753.700 kb on + strand, within PFR28_00712at 753.700 kb on + strand, within PFR28_00712at 753.701 kb on - strand, within PFR28_00712at 753.728 kb on - strand, within PFR28_00712at 753.826 kb on + strand, within PFR28_00712at 753.826 kb on + strand, within PFR28_00712at 753.827 kb on - strand, within PFR28_00712at 753.866 kb on + strand, within PFR28_00712at 753.867 kb on - strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.898 kb on + strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.899 kb on - strand, within PFR28_00712at 753.961 kb on + strand, within PFR28_00712at 753.961 kb on + strand, within PFR28_00712at 753.962 kb on - strand, within PFR28_00712at 753.962 kb on - strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.031 kb on + strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.032 kb on - strand, within PFR28_00712at 754.088 kb on + strand, within PFR28_00712at 754.089 kb on - strand, within PFR28_00712at 754.089 kb on - strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.173 kb on + strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.174 kb on - strand, within PFR28_00712at 754.411 kb on + strandat 754.508 kb on + strandat 754.508 kb on + strandat 754.509 kb on - strandat 754.509 kb on - strandat 754.521 kb on + strandat 754.521 kb on + strandat 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.548 kb on + strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.549 kb on - strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.554 kb on + strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.555 kb on - strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.710 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.743 kb on + strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.744 kb on - strand, within PFR28_00713at 754.833 kb on + strandat 754.834 kb on - strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.952 kb on + strandat 754.953 kb on - strandat 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.131 kb on + strand, within PFR28_00714at 755.132 kb on - strand, within PFR28_00714at 755.213 kb on + strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.214 kb on - strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.225 kb on + strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.226 kb on - strand, within PFR28_00714at 755.334 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.396 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.486 kb on + strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.487 kb on - strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.531 kb on + strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.532 kb on - strand, within PFR28_00714at 755.564 kb on - strand, within PFR28_00714

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 2.5 mM
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753,558 + PFR28_00712 0.17 +0.2
753,559 - PFR28_00712 0.17 +1.8
753,700 + PFR28_00712 0.29 +0.8
753,700 + PFR28_00712 0.29 +0.9
753,700 + PFR28_00712 0.29 -2.7
753,700 + PFR28_00712 0.29 +0.6
753,700 + PFR28_00712 0.29 +0.4
753,701 - PFR28_00712 0.29 +0.3
753,728 - PFR28_00712 0.32 -3.0
753,826 + PFR28_00712 0.40 -1.1
753,826 + PFR28_00712 0.40 -0.8
753,827 - PFR28_00712 0.40 -3.4
753,866 + PFR28_00712 0.44 -0.5
753,867 - PFR28_00712 0.44 -0.2
753,898 + PFR28_00712 0.47 -0.2
753,898 + PFR28_00712 0.47 +0.6
753,898 + PFR28_00712 0.47 +0.1
753,898 + PFR28_00712 0.47 -0.5
753,898 + PFR28_00712 0.47 -0.1
753,898 + PFR28_00712 0.47 -1.8
753,899 - PFR28_00712 0.47 -1.4
753,899 - PFR28_00712 0.47 -0.7
753,899 - PFR28_00712 0.47 +0.1
753,899 - PFR28_00712 0.47 -0.4
753,899 - PFR28_00712 0.47 -0.2
753,899 - PFR28_00712 0.47 -1.3
753,961 + PFR28_00712 0.52 +0.2
753,961 + PFR28_00712 0.52 -0.4
753,962 - PFR28_00712 0.52 -1.2
753,962 - PFR28_00712 0.52 -1.2
754,031 + PFR28_00712 0.58 +0.6
754,031 + PFR28_00712 0.58 -0.6
754,031 + PFR28_00712 0.58 -0.4
754,031 + PFR28_00712 0.58 -1.1
754,031 + PFR28_00712 0.58 +1.4
754,031 + PFR28_00712 0.58 -1.5
754,032 - PFR28_00712 0.58 +0.8
754,032 - PFR28_00712 0.58 -0.9
754,032 - PFR28_00712 0.58 -1.4
754,032 - PFR28_00712 0.58 +0.1
754,032 - PFR28_00712 0.58 +1.4
754,032 - PFR28_00712 0.58 -0.4
754,032 - PFR28_00712 0.58 -0.6
754,088 + PFR28_00712 0.63 +0.6
754,089 - PFR28_00712 0.63 -0.4
754,089 - PFR28_00712 0.63 -0.8
754,173 + PFR28_00712 0.71 -1.9
754,173 + PFR28_00712 0.71 -0.6
754,173 + PFR28_00712 0.71 -0.2
754,174 - PFR28_00712 0.71 -1.1
754,174 - PFR28_00712 0.71 -1.3
754,174 - PFR28_00712 0.71 -0.6
754,411 + -2.2
754,508 + -1.0
754,508 + +0.2
754,509 - +0.4
754,509 - +0.5
754,521 + -0.5
754,521 + -0.4
754,548 + PFR28_00713 0.16 -1.0
754,548 + PFR28_00713 0.16 -0.7
754,548 + PFR28_00713 0.16 -1.2
754,548 + PFR28_00713 0.16 -0.6
754,548 + PFR28_00713 0.16 +0.6
754,548 + PFR28_00713 0.16 -0.8
754,548 + PFR28_00713 0.16 -0.7
754,548 + PFR28_00713 0.16 -0.2
754,548 + PFR28_00713 0.16 -0.7
754,548 + PFR28_00713 0.16 -1.4
754,548 + PFR28_00713 0.16 -0.6
754,548 + PFR28_00713 0.16 -0.3
754,548 + PFR28_00713 0.16 -0.6
754,548 + PFR28_00713 0.16 +0.4
754,549 - PFR28_00713 0.17 -0.4
754,549 - PFR28_00713 0.17 -1.2
754,549 - PFR28_00713 0.17 -0.9
754,549 - PFR28_00713 0.17 +0.8
754,549 - PFR28_00713 0.17 +0.0
754,549 - PFR28_00713 0.17 -1.4
754,549 - PFR28_00713 0.17 -0.7
754,549 - PFR28_00713 0.17 -0.7
754,549 - PFR28_00713 0.17 -1.5
754,549 - PFR28_00713 0.17 -1.5
754,549 - PFR28_00713 0.17 +2.8
754,549 - PFR28_00713 0.17 -0.3
754,549 - PFR28_00713 0.17 -0.7
754,549 - PFR28_00713 0.17 -2.5
754,554 + PFR28_00713 0.18 +0.2
754,554 + PFR28_00713 0.18 +0.2
754,554 + PFR28_00713 0.18 -0.0
754,554 + PFR28_00713 0.18 -0.1
754,554 + PFR28_00713 0.18 -2.4
754,554 + PFR28_00713 0.18 -0.8
754,554 + PFR28_00713 0.18 -0.4
754,554 + PFR28_00713 0.18 -0.9
754,555 - PFR28_00713 0.19 -0.9
754,555 - PFR28_00713 0.19 -2.2
754,555 - PFR28_00713 0.19 -0.7
754,555 - PFR28_00713 0.19 -0.0
754,555 - PFR28_00713 0.19 +0.2
754,555 - PFR28_00713 0.19 +2.2
754,555 - PFR28_00713 0.19 -1.6
754,555 - PFR28_00713 0.19 -1.1
754,555 - PFR28_00713 0.19 +0.6
754,555 - PFR28_00713 0.19 -1.2
754,555 - PFR28_00713 0.19 -1.4
754,710 + PFR28_00713 0.71 +0.0
754,710 + PFR28_00713 0.71 -1.2
754,710 + PFR28_00713 0.71 -0.8
754,710 + PFR28_00713 0.71 -0.8
754,743 + PFR28_00713 0.83 +0.1
754,743 + PFR28_00713 0.83 -0.7
754,743 + PFR28_00713 0.83 -0.8
754,744 - PFR28_00713 0.83 -1.3
754,744 - PFR28_00713 0.83 -0.9
754,744 - PFR28_00713 0.83 -0.3
754,744 - PFR28_00713 0.83 -0.8
754,744 - PFR28_00713 0.83 -1.2
754,744 - PFR28_00713 0.83 -0.2
754,833 + -0.6
754,834 - -1.4
754,952 + -1.7
754,952 + -0.1
754,952 + +0.9
754,952 + -0.3
754,952 + -0.5
754,953 - +1.0
755,131 + PFR28_00714 0.23 -1.5
755,131 + PFR28_00714 0.23 -0.6
755,131 + PFR28_00714 0.23 -0.8
755,132 - PFR28_00714 0.23 -0.4
755,213 + PFR28_00714 0.32 +0.0
755,214 - PFR28_00714 0.32 +0.1
755,214 - PFR28_00714 0.32 -1.2
755,225 + PFR28_00714 0.33 -0.4
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 -0.3
755,225 + PFR28_00714 0.33 +0.6
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 +0.6
755,225 + PFR28_00714 0.33 +1.8
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 -0.7
755,225 + PFR28_00714 0.33 -0.4
755,225 + PFR28_00714 0.33 +0.2
755,225 + PFR28_00714 0.33 +0.3
755,225 + PFR28_00714 0.33 -0.8
755,225 + PFR28_00714 0.33 -0.1
755,225 + PFR28_00714 0.33 -0.2
755,225 + PFR28_00714 0.33 -1.1
755,225 + PFR28_00714 0.33 -0.2
755,226 - PFR28_00714 0.33 -0.4
755,226 - PFR28_00714 0.33 -0.9
755,226 - PFR28_00714 0.33 -0.6
755,226 - PFR28_00714 0.33 +0.8
755,226 - PFR28_00714 0.33 -0.2
755,226 - PFR28_00714 0.33 -0.0
755,226 - PFR28_00714 0.33 +0.8
755,226 - PFR28_00714 0.33 +0.5
755,226 - PFR28_00714 0.33 -0.6
755,226 - PFR28_00714 0.33 -1.0
755,226 - PFR28_00714 0.33 +0.2
755,226 - PFR28_00714 0.33 +0.5
755,226 - PFR28_00714 0.33 -0.2
755,226 - PFR28_00714 0.33 +1.2
755,226 - PFR28_00714 0.33 +0.0
755,334 + PFR28_00714 0.45 -0.2
755,396 + PFR28_00714 0.51 +0.2
755,396 + PFR28_00714 0.51 +0.1
755,396 + PFR28_00714 0.51 +0.2
755,486 + PFR28_00714 0.61 +0.1
755,486 + PFR28_00714 0.61 +0.8
755,486 + PFR28_00714 0.61 -2.2
755,486 + PFR28_00714 0.61 +2.2
755,486 + PFR28_00714 0.61 +1.3
755,486 + PFR28_00714 0.61 +0.0
755,487 - PFR28_00714 0.61 +0.1
755,487 - PFR28_00714 0.61 +1.0
755,487 - PFR28_00714 0.61 -1.0
755,487 - PFR28_00714 0.61 -0.1
755,487 - PFR28_00714 0.61 -0.4
755,487 - PFR28_00714 0.61 +0.2
755,487 - PFR28_00714 0.61 +0.5
755,487 - PFR28_00714 0.61 +0.8
755,487 - PFR28_00714 0.61 -0.1
755,487 - PFR28_00714 0.61 -0.6
755,531 + PFR28_00714 0.66 +0.4
755,531 + PFR28_00714 0.66 -1.5
755,531 + PFR28_00714 0.66 -1.0
755,531 + PFR28_00714 0.66 +0.7
755,532 - PFR28_00714 0.66 +0.6
755,532 - PFR28_00714 0.66 +2.2
755,532 - PFR28_00714 0.66 -0.6
755,532 - PFR28_00714 0.66 -1.8
755,564 - PFR28_00714 0.69 +0.1

Or see this region's nucleotide sequence