Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_836 and PfGW456L13_837 are separated by 409 nucleotides PfGW456L13_837 and PfGW456L13_838 are separated by 35 nucleotides
PfGW456L13_836 - FIG00953456: hypothetical protein, at 945,448 to 945,708
_836
PfGW456L13_837 - Nitrogen regulatory protein P-II, glnK, at 946,118 to 946,456
_837
PfGW456L13_838 - Ammonium transporter, at 946,492 to 947,829
_838
Position (kb) 945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 944.463 kb on + strand at 944.511 kb on + strand at 944.523 kb on - strand at 944.532 kb on + strand at 944.533 kb on - strand at 944.558 kb on + strand at 944.571 kb on + strand at 944.572 kb on - strand at 944.591 kb on - strand at 944.624 kb on - strand at 944.702 kb on - strand at 944.734 kb on + strand at 944.776 kb on - strand at 944.776 kb on - strand at 944.839 kb on + strand at 944.865 kb on + strand at 944.866 kb on - strand at 944.869 kb on + strand at 944.870 kb on - strand at 944.933 kb on + strand at 944.934 kb on - strand at 945.050 kb on + strand at 945.050 kb on + strand at 945.053 kb on + strand at 945.067 kb on - strand at 945.170 kb on + strand at 945.171 kb on - strand at 945.171 kb on - strand at 945.258 kb on + strand at 945.258 kb on + strand at 945.259 kb on - strand at 945.259 kb on - strand at 945.306 kb on + strand at 945.361 kb on - strand at 945.449 kb on + strand at 945.449 kb on + strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.758 kb on - strand at 945.824 kb on - strand at 945.831 kb on - strand at 945.920 kb on + strand at 946.454 kb on + strand at 946.454 kb on + strand at 946.454 kb on + strand at 946.455 kb on - strand at 946.491 kb on + strand at 946.491 kb on + strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.538 kb on + strand at 946.538 kb on + strand at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.667 kb on - strand, within PfGW456L13_838
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 944,463 + +0.2 944,511 + +0.2 944,523 - -0.4 944,532 + +1.4 944,533 - -0.4 944,558 + -0.1 944,571 + -0.2 944,572 - +0.9 944,591 - +1.0 944,624 - +0.9 944,702 - +0.3 944,734 + -0.5 944,776 - -0.1 944,776 - +0.2 944,839 + -1.0 944,865 + +0.2 944,866 - +0.3 944,869 + +1.5 944,870 - +0.5 944,933 + +1.0 944,934 - +0.5 945,050 + -1.0 945,050 + +0.8 945,053 + -1.2 945,067 - -0.8 945,170 + +0.1 945,171 - -0.7 945,171 - +0.0 945,258 + +0.9 945,258 + +0.6 945,259 - -0.4 945,259 - -0.3 945,306 + +0.2 945,361 - -0.7 945,449 + +0.9 945,449 + -0.9 945,742 - +0.5 945,742 - +0.4 945,742 - +0.7 945,742 - +1.0 945,742 - +0.4 945,755 + -0.2 945,755 + +1.3 945,755 + -0.1 945,755 + -1.8 945,755 + -2.9 945,755 + -0.7 945,755 + -0.8 945,755 + +0.2 945,755 + -0.2 945,755 + -0.6 945,755 + +0.2 945,756 - +0.4 945,756 - +0.4 945,756 - -0.2 945,756 - +0.4 945,756 - -0.1 945,756 - -0.8 945,757 + +1.4 945,757 + -0.1 945,757 + -0.8 945,757 + -0.4 945,758 - +0.2 945,824 - -0.3 945,831 - -0.4 945,920 + -0.1 946,454 + -0.3 946,454 + -1.1 946,454 + +0.7 946,455 - +0.1 946,491 + -1.0 946,491 + +0.2 946,492 - -0.3 946,492 - -0.4 946,492 - +0.1 946,492 - -1.1 946,538 + -1.0 946,538 + -0.3 946,666 + PfGW456L13_838 0.13 -0.4 946,666 + PfGW456L13_838 0.13 -2.0 946,666 + PfGW456L13_838 0.13 -2.4 946,666 + PfGW456L13_838 0.13 -1.3 946,666 + PfGW456L13_838 0.13 -0.5 946,666 + PfGW456L13_838 0.13 -0.0 946,667 - PfGW456L13_838 0.13 -0.2
Or see this region's nucleotide sequence