Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4715

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4714 and PfGW456L13_4715 are separated by 287 nucleotidesPfGW456L13_4715 and PfGW456L13_4716 are separated by 32 nucleotides PfGW456L13_4714 - Na+/H+ antiporter, at 5,253,151 to 5,254,812 _4714 PfGW456L13_4715 - FIG138056: a glutathione-dependent thiol reductase, at 5,255,100 to 5,255,462 _4715 PfGW456L13_4716 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 5,255,495 to 5,256,529 _4716 Position (kb) 5255 5256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5254.377 kb on + strand, within PfGW456L13_4714at 5254.377 kb on + strandat 5254.377 kb on + strand, within PfGW456L13_4714at 5254.377 kb on + strand, within PfGW456L13_4714at 5254.378 kb on - strand, within PfGW456L13_4714at 5254.378 kb on - strand, within PfGW456L13_4714at 5254.484 kb on + strand, within PfGW456L13_4714at 5254.485 kb on - strand, within PfGW456L13_4714at 5254.756 kb on + strandat 5254.767 kb on + strandat 5254.767 kb on + strandat 5254.767 kb on + strandat 5254.767 kb on + strandat 5254.768 kb on - strandat 5254.768 kb on - strandat 5254.768 kb on - strandat 5254.769 kb on + strandat 5254.769 kb on + strandat 5254.769 kb on + strandat 5254.770 kb on - strandat 5254.782 kb on + strandat 5254.823 kb on + strandat 5254.824 kb on - strandat 5254.824 kb on - strandat 5254.824 kb on - strandat 5254.824 kb on - strandat 5254.826 kb on + strandat 5254.827 kb on - strandat 5254.834 kb on + strandat 5254.834 kb on + strandat 5254.835 kb on - strandat 5254.843 kb on + strandat 5254.844 kb on - strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.877 kb on + strandat 5254.878 kb on - strandat 5254.878 kb on - strandat 5254.878 kb on - strandat 5254.878 kb on - strandat 5254.878 kb on - strandat 5254.878 kb on - strandat 5254.889 kb on + strandat 5254.890 kb on - strandat 5254.931 kb on + strandat 5254.931 kb on + strandat 5254.931 kb on + strandat 5254.932 kb on - strandat 5254.932 kb on - strandat 5254.932 kb on - strandat 5254.933 kb on + strandat 5254.933 kb on + strandat 5254.933 kb on + strandat 5254.933 kb on + strandat 5254.933 kb on + strandat 5254.934 kb on - strandat 5254.934 kb on - strandat 5254.934 kb on - strandat 5254.934 kb on - strandat 5254.934 kb on - strandat 5254.983 kb on + strandat 5254.984 kb on - strandat 5254.984 kb on - strandat 5254.994 kb on + strandat 5254.994 kb on + strandat 5254.994 kb on + strandat 5254.994 kb on + strandat 5254.994 kb on + strandat 5254.995 kb on - strandat 5255.054 kb on + strandat 5255.055 kb on - strandat 5255.055 kb on - strandat 5255.055 kb on - strandat 5255.069 kb on + strandat 5255.069 kb on + strandat 5255.070 kb on - strandat 5255.070 kb on - strandat 5255.073 kb on + strandat 5255.073 kb on + strandat 5255.074 kb on - strandat 5255.211 kb on + strand, within PfGW456L13_4715at 5255.211 kb on + strand, within PfGW456L13_4715at 5255.211 kb on + strand, within PfGW456L13_4715at 5255.212 kb on - strand, within PfGW456L13_4715at 5255.212 kb on - strand, within PfGW456L13_4715at 5255.212 kb on - strand, within PfGW456L13_4715at 5255.212 kb on - strand, within PfGW456L13_4715at 5255.438 kb on + strandat 5255.438 kb on + strandat 5255.438 kb on + strandat 5255.438 kb on + strandat 5255.439 kb on - strandat 5255.439 kb on - strandat 5255.439 kb on - strandat 5255.442 kb on + strandat 5255.442 kb on + strandat 5255.443 kb on - strandat 5255.443 kb on - strandat 5255.460 kb on + strandat 5255.460 kb on + strandat 5255.460 kb on + strandat 5255.460 kb on + strandat 5255.460 kb on + strandat 5255.461 kb on - strandat 5255.461 kb on - strandat 5255.461 kb on - strandat 5255.461 kb on - strandat 5255.461 kb on - strandat 5255.461 kb on - strandat 5255.503 kb on + strandat 5255.503 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
5,254,377 + PfGW456L13_4714 0.74 +1.2
5,254,377 + +0.4
5,254,377 + PfGW456L13_4714 0.74 +0.9
5,254,377 + PfGW456L13_4714 0.74 +0.7
5,254,378 - PfGW456L13_4714 0.74 -0.0
5,254,378 - PfGW456L13_4714 0.74 -0.1
5,254,484 + PfGW456L13_4714 0.80 +0.4
5,254,485 - PfGW456L13_4714 0.80 -0.6
5,254,756 + -0.4
5,254,767 + +0.4
5,254,767 + -0.0
5,254,767 + -0.4
5,254,767 + +0.7
5,254,768 - +1.0
5,254,768 - -0.4
5,254,768 - +1.1
5,254,769 + -0.7
5,254,769 + -1.3
5,254,769 + +0.1
5,254,770 - -0.0
5,254,782 + -1.2
5,254,823 + -1.6
5,254,824 - +0.7
5,254,824 - -0.6
5,254,824 - +0.1
5,254,824 - -0.1
5,254,826 + +1.5
5,254,827 - +0.6
5,254,834 + +0.0
5,254,834 + +0.8
5,254,835 - -0.2
5,254,843 + +0.1
5,254,844 - -3.1
5,254,877 + -0.1
5,254,877 + -1.8
5,254,877 + -0.6
5,254,877 + +0.1
5,254,877 + +0.4
5,254,877 + -0.2
5,254,877 + -2.6
5,254,877 + +0.7
5,254,878 - +2.8
5,254,878 - -1.4
5,254,878 - -0.3
5,254,878 - -0.7
5,254,878 - +0.4
5,254,878 - -0.2
5,254,889 + -0.8
5,254,890 - -0.0
5,254,931 + -0.7
5,254,931 + -0.3
5,254,931 + -1.1
5,254,932 - +0.9
5,254,932 - +0.3
5,254,932 - -0.7
5,254,933 + -1.7
5,254,933 + +0.2
5,254,933 + -1.4
5,254,933 + -2.1
5,254,933 + +0.4
5,254,934 - +0.1
5,254,934 - -0.3
5,254,934 - +0.4
5,254,934 - +0.1
5,254,934 - -2.1
5,254,983 + -1.1
5,254,984 - +1.3
5,254,984 - +0.8
5,254,994 + -0.3
5,254,994 + -1.1
5,254,994 + -0.4
5,254,994 + -0.4
5,254,994 + -0.0
5,254,995 - -1.1
5,255,054 + -1.3
5,255,055 - +0.4
5,255,055 - -2.0
5,255,055 - +2.2
5,255,069 + -0.4
5,255,069 + -0.1
5,255,070 - -1.0
5,255,070 - +0.3
5,255,073 + +0.3
5,255,073 + +0.3
5,255,074 - +1.0
5,255,211 + PfGW456L13_4715 0.31 -1.7
5,255,211 + PfGW456L13_4715 0.31 +0.1
5,255,211 + PfGW456L13_4715 0.31 -1.2
5,255,212 - PfGW456L13_4715 0.31 -2.3
5,255,212 - PfGW456L13_4715 0.31 -1.5
5,255,212 - PfGW456L13_4715 0.31 +0.2
5,255,212 - PfGW456L13_4715 0.31 -0.8
5,255,438 + +0.2
5,255,438 + -0.3
5,255,438 + -2.4
5,255,438 + -0.0
5,255,439 - +0.0
5,255,439 - -0.2
5,255,439 - +0.8
5,255,442 + -0.4
5,255,442 + -0.2
5,255,443 - +0.0
5,255,443 - -0.8
5,255,460 + +1.0
5,255,460 + -0.6
5,255,460 + -0.6
5,255,460 + -1.3
5,255,460 + -0.3
5,255,461 - -0.8
5,255,461 - -1.0
5,255,461 - +0.1
5,255,461 - +0.1
5,255,461 - -0.4
5,255,461 - -1.4
5,255,503 + -1.1
5,255,503 + -1.1

Or see this region's nucleotide sequence