Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4075

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4073 and PfGW456L13_4074 are separated by 208 nucleotidesPfGW456L13_4074 and PfGW456L13_4075 are separated by 79 nucleotidesPfGW456L13_4075 and PfGW456L13_4076 are separated by 277 nucleotidesPfGW456L13_4076 and PfGW456L13_4077 are separated by 67 nucleotides PfGW456L13_4073 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 4,571,434 to 4,572,582 _4073 PfGW456L13_4074 - Recombination protein RecR, at 4,572,791 to 4,573,393 _4074 PfGW456L13_4075 - Putative oxidoreductase YncB, at 4,573,473 to 4,574,504 _4075 PfGW456L13_4076 - FIG000557: hypothetical protein co-occurring with RecR, at 4,574,782 to 4,575,120 _4076 PfGW456L13_4077 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 4,575,188 to 4,577,269 _4077 Position (kb) 4573 4574 4575Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4572.563 kb on + strandat 4572.563 kb on + strandat 4572.563 kb on + strandat 4572.563 kb on + strandat 4572.873 kb on - strand, within PfGW456L13_4074at 4572.930 kb on + strand, within PfGW456L13_4074at 4572.930 kb on + strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4572.931 kb on - strand, within PfGW456L13_4074at 4573.086 kb on + strand, within PfGW456L13_4074at 4573.087 kb on - strand, within PfGW456L13_4074at 4573.087 kb on - strand, within PfGW456L13_4074at 4573.119 kb on + strand, within PfGW456L13_4074at 4573.119 kb on + strand, within PfGW456L13_4074at 4573.120 kb on - strand, within PfGW456L13_4074at 4573.120 kb on - strand, within PfGW456L13_4074at 4573.120 kb on - strand, within PfGW456L13_4074at 4573.429 kb on + strandat 4573.429 kb on + strandat 4573.429 kb on + strandat 4573.430 kb on - strandat 4573.430 kb on - strandat 4573.430 kb on - strandat 4573.431 kb on + strandat 4573.470 kb on + strandat 4573.470 kb on + strandat 4573.645 kb on + strand, within PfGW456L13_4075at 4573.645 kb on + strand, within PfGW456L13_4075at 4573.646 kb on - strand, within PfGW456L13_4075at 4573.646 kb on - strand, within PfGW456L13_4075at 4573.750 kb on + strand, within PfGW456L13_4075at 4573.750 kb on + strand, within PfGW456L13_4075at 4573.751 kb on - strand, within PfGW456L13_4075at 4573.751 kb on - strand, within PfGW456L13_4075at 4573.751 kb on - strand, within PfGW456L13_4075at 4573.751 kb on - strand, within PfGW456L13_4075at 4573.751 kb on - strand, within PfGW456L13_4075at 4573.818 kb on + strand, within PfGW456L13_4075at 4573.819 kb on - strand, within PfGW456L13_4075at 4573.819 kb on - strand, within PfGW456L13_4075at 4573.841 kb on - strand, within PfGW456L13_4075at 4573.841 kb on - strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.843 kb on + strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.844 kb on - strand, within PfGW456L13_4075at 4573.942 kb on + strand, within PfGW456L13_4075at 4573.943 kb on - strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.095 kb on + strand, within PfGW456L13_4075at 4574.096 kb on - strand, within PfGW456L13_4075at 4574.096 kb on - strand, within PfGW456L13_4075at 4574.096 kb on - strand, within PfGW456L13_4075at 4574.096 kb on - strand, within PfGW456L13_4075at 4574.114 kb on + strand, within PfGW456L13_4075at 4574.347 kb on + strand, within PfGW456L13_4075at 4574.348 kb on - strand, within PfGW456L13_4075at 4574.423 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.542 kb on - strandat 4574.542 kb on - strandat 4574.565 kb on - strandat 4574.580 kb on + strandat 4574.581 kb on - strandat 4574.581 kb on - strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.740 kb on - strandat 4574.756 kb on + strandat 4574.757 kb on - strandat 4575.124 kb on - strandat 4575.124 kb on - strandat 4575.138 kb on + strandat 4575.139 kb on - strandat 4575.139 kb on - strandat 4575.148 kb on - strandat 4575.186 kb on + strandat 4575.186 kb on + strandat 4575.187 kb on - strandat 4575.187 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,572,563 + -0.3
4,572,563 + -1.1
4,572,563 + +0.6
4,572,563 + -0.3
4,572,873 - PfGW456L13_4074 0.14 -1.0
4,572,930 + PfGW456L13_4074 0.23 -0.1
4,572,930 + PfGW456L13_4074 0.23 +0.8
4,572,931 - PfGW456L13_4074 0.23 +0.6
4,572,931 - PfGW456L13_4074 0.23 +0.5
4,572,931 - PfGW456L13_4074 0.23 -0.8
4,572,931 - PfGW456L13_4074 0.23 +1.0
4,572,931 - PfGW456L13_4074 0.23 -1.7
4,572,931 - PfGW456L13_4074 0.23 -1.3
4,572,931 - PfGW456L13_4074 0.23 +0.1
4,572,931 - PfGW456L13_4074 0.23 -1.8
4,573,086 + PfGW456L13_4074 0.49 -0.2
4,573,087 - PfGW456L13_4074 0.49 +0.3
4,573,087 - PfGW456L13_4074 0.49 -1.2
4,573,119 + PfGW456L13_4074 0.54 +0.9
4,573,119 + PfGW456L13_4074 0.54 -0.4
4,573,120 - PfGW456L13_4074 0.55 -0.6
4,573,120 - PfGW456L13_4074 0.55 +0.5
4,573,120 - PfGW456L13_4074 0.55 -1.7
4,573,429 + -1.0
4,573,429 + -0.5
4,573,429 + +0.4
4,573,430 - +0.4
4,573,430 - -1.2
4,573,430 - +1.3
4,573,431 + +0.3
4,573,470 + +0.7
4,573,470 + +0.1
4,573,645 + PfGW456L13_4075 0.17 +2.0
4,573,645 + PfGW456L13_4075 0.17 -0.1
4,573,646 - PfGW456L13_4075 0.17 +0.6
4,573,646 - PfGW456L13_4075 0.17 -1.4
4,573,750 + PfGW456L13_4075 0.27 +0.8
4,573,750 + PfGW456L13_4075 0.27 -1.0
4,573,751 - PfGW456L13_4075 0.27 +1.1
4,573,751 - PfGW456L13_4075 0.27 +0.5
4,573,751 - PfGW456L13_4075 0.27 -0.1
4,573,751 - PfGW456L13_4075 0.27 +0.0
4,573,751 - PfGW456L13_4075 0.27 +1.4
4,573,818 + PfGW456L13_4075 0.33 -0.2
4,573,819 - PfGW456L13_4075 0.34 +0.9
4,573,819 - PfGW456L13_4075 0.34 -0.2
4,573,841 - PfGW456L13_4075 0.36 +0.3
4,573,841 - PfGW456L13_4075 0.36 -0.1
4,573,843 + PfGW456L13_4075 0.36 -0.2
4,573,843 + PfGW456L13_4075 0.36 +1.2
4,573,843 + PfGW456L13_4075 0.36 -0.6
4,573,843 + PfGW456L13_4075 0.36 -0.6
4,573,843 + PfGW456L13_4075 0.36 +0.1
4,573,843 + PfGW456L13_4075 0.36 +0.1
4,573,843 + PfGW456L13_4075 0.36 +0.1
4,573,843 + PfGW456L13_4075 0.36 -0.2
4,573,843 + PfGW456L13_4075 0.36 +0.2
4,573,843 + PfGW456L13_4075 0.36 -0.5
4,573,843 + PfGW456L13_4075 0.36 +0.3
4,573,844 - PfGW456L13_4075 0.36 -0.4
4,573,844 - PfGW456L13_4075 0.36 -0.2
4,573,844 - PfGW456L13_4075 0.36 +0.9
4,573,844 - PfGW456L13_4075 0.36 +0.2
4,573,844 - PfGW456L13_4075 0.36 +0.3
4,573,844 - PfGW456L13_4075 0.36 -0.6
4,573,844 - PfGW456L13_4075 0.36 +0.5
4,573,844 - PfGW456L13_4075 0.36 -0.9
4,573,844 - PfGW456L13_4075 0.36 +0.2
4,573,844 - PfGW456L13_4075 0.36 -0.7
4,573,844 - PfGW456L13_4075 0.36 +1.0
4,573,844 - PfGW456L13_4075 0.36 +1.2
4,573,942 + PfGW456L13_4075 0.45 +0.4
4,573,943 - PfGW456L13_4075 0.46 -0.3
4,574,095 + PfGW456L13_4075 0.60 +0.1
4,574,095 + PfGW456L13_4075 0.60 +0.5
4,574,095 + PfGW456L13_4075 0.60 -1.5
4,574,095 + PfGW456L13_4075 0.60 +0.2
4,574,095 + PfGW456L13_4075 0.60 +1.3
4,574,095 + PfGW456L13_4075 0.60 -0.2
4,574,095 + PfGW456L13_4075 0.60 -0.1
4,574,096 - PfGW456L13_4075 0.60 -0.3
4,574,096 - PfGW456L13_4075 0.60 +0.9
4,574,096 - PfGW456L13_4075 0.60 +0.6
4,574,096 - PfGW456L13_4075 0.60 +0.9
4,574,114 + PfGW456L13_4075 0.62 -1.3
4,574,347 + PfGW456L13_4075 0.85 +0.7
4,574,348 - PfGW456L13_4075 0.85 -0.0
4,574,423 + -0.7
4,574,541 + +0.3
4,574,541 + +0.7
4,574,541 + -2.2
4,574,541 + +0.2
4,574,541 + -0.6
4,574,541 + +0.2
4,574,542 - -2.0
4,574,542 - +1.3
4,574,565 - -0.6
4,574,580 + +0.4
4,574,581 - +0.7
4,574,581 - +1.9
4,574,703 + +0.7
4,574,703 + +0.3
4,574,703 + +1.2
4,574,703 + -1.3
4,574,703 + +0.4
4,574,703 + +0.1
4,574,703 + +2.3
4,574,703 + -0.4
4,574,703 + +0.7
4,574,703 + +0.4
4,574,703 + -0.2
4,574,704 - -0.8
4,574,704 - +0.6
4,574,704 - -2.5
4,574,704 - -0.2
4,574,704 - +0.4
4,574,704 - -0.4
4,574,704 - +0.9
4,574,740 - +0.1
4,574,756 + +0.8
4,574,757 - +1.2
4,575,124 - -0.0
4,575,124 - +0.5
4,575,138 + +0.7
4,575,139 - +0.6
4,575,139 - +0.4
4,575,148 - -0.9
4,575,186 + +0.9
4,575,186 + +0.5
4,575,187 - -0.7
4,575,187 - -0.1
4,575,190 - +0.0
4,575,190 - -0.3
4,575,190 - -0.6
4,575,190 - -0.2
4,575,190 - -0.3
4,575,190 - -0.4
4,575,224 - -1.9
4,575,224 - -1.7
4,575,224 - -0.9
4,575,224 - -2.3
4,575,224 - -3.6
4,575,227 - -2.7

Or see this region's nucleotide sequence