Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_335

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_333 and PfGW456L13_334 are separated by 114 nucleotidesPfGW456L13_334 and PfGW456L13_335 are separated by 3 nucleotidesPfGW456L13_335 and PfGW456L13_336 are separated by 261 nucleotides PfGW456L13_333 - Methyl-accepting chemotaxis protein, at 387,738 to 389,618 _333 PfGW456L13_334 - FIG027190: Putative transmembrane protein, at 389,733 to 390,335 _334 PfGW456L13_335 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 390,339 to 391,349 _335 PfGW456L13_336 - Probable transmembrane protein, at 391,611 to 392,984 _336 Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1 2at 389.603 kb on + strandat 389.603 kb on + strandat 389.604 kb on - strandat 389.685 kb on + strandat 389.685 kb on + strandat 389.685 kb on + strandat 389.685 kb on + strandat 389.685 kb on + strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.686 kb on - strandat 389.734 kb on + strandat 389.734 kb on + strandat 389.835 kb on + strand, within PfGW456L13_334at 389.836 kb on - strand, within PfGW456L13_334at 389.836 kb on - strand, within PfGW456L13_334at 389.836 kb on - strand, within PfGW456L13_334at 389.857 kb on + strand, within PfGW456L13_334at 389.867 kb on - strand, within PfGW456L13_334at 389.867 kb on - strand, within PfGW456L13_334at 389.918 kb on + strand, within PfGW456L13_334at 389.918 kb on + strand, within PfGW456L13_334at 389.920 kb on + strand, within PfGW456L13_334at 389.920 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.977 kb on + strand, within PfGW456L13_334at 389.978 kb on - strand, within PfGW456L13_334at 389.978 kb on - strand, within PfGW456L13_334at 389.978 kb on - strand, within PfGW456L13_334at 390.029 kb on + strand, within PfGW456L13_334at 390.030 kb on - strand, within PfGW456L13_334at 390.030 kb on - strand, within PfGW456L13_334at 390.340 kb on + strandat 390.341 kb on - strandat 391.466 kb on + strandat 391.466 kb on + strandat 391.466 kb on + strandat 391.466 kb on + strandat 391.467 kb on - strandat 391.467 kb on - strandat 391.467 kb on - strandat 391.467 kb on - strandat 391.467 kb on - strandat 391.470 kb on - strandat 391.470 kb on - strandat 391.814 kb on - strand, within PfGW456L13_336at 391.882 kb on + strand, within PfGW456L13_336at 391.882 kb on + strand, within PfGW456L13_336at 391.882 kb on + strand, within PfGW456L13_336at 391.882 kb on + strand, within PfGW456L13_336at 391.933 kb on + strand, within PfGW456L13_336at 391.933 kb on + strand, within PfGW456L13_336at 391.933 kb on + strand, within PfGW456L13_336at 391.933 kb on + strand, within PfGW456L13_336at 391.934 kb on - strand, within PfGW456L13_336at 391.934 kb on - strand, within PfGW456L13_336at 391.934 kb on - strand, within PfGW456L13_336at 391.934 kb on - strand, within PfGW456L13_336at 392.066 kb on - strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.206 kb on + strand, within PfGW456L13_336at 392.207 kb on - strand, within PfGW456L13_336at 392.207 kb on - strand, within PfGW456L13_336at 392.289 kb on + strand, within PfGW456L13_336at 392.289 kb on + strand, within PfGW456L13_336at 392.289 kb on + strand, within PfGW456L13_336at 392.289 kb on + strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.290 kb on - strand, within PfGW456L13_336at 392.338 kb on - strand, within PfGW456L13_336at 392.347 kb on + strand, within PfGW456L13_336at 392.347 kb on + strand, within PfGW456L13_336

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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389,603 + +0.8
389,603 + +0.2
389,604 - +0.0
389,685 + +0.6
389,685 + -1.3
389,685 + -0.9
389,685 + +0.6
389,685 + -0.0
389,686 - -1.9
389,686 - +0.1
389,686 - +0.2
389,686 - +0.3
389,686 - -1.2
389,686 - +0.9
389,686 - +1.8
389,686 - +0.9
389,686 - +0.5
389,686 - -0.3
389,686 - -0.4
389,686 - +0.5
389,734 + +0.6
389,734 + -0.6
389,835 + PfGW456L13_334 0.17 -0.9
389,836 - PfGW456L13_334 0.17 -0.7
389,836 - PfGW456L13_334 0.17 -0.7
389,836 - PfGW456L13_334 0.17 +0.7
389,857 + PfGW456L13_334 0.21 -0.3
389,867 - PfGW456L13_334 0.22 +0.2
389,867 - PfGW456L13_334 0.22 -0.5
389,918 + PfGW456L13_334 0.31 +0.5
389,918 + PfGW456L13_334 0.31 +0.8
389,920 + PfGW456L13_334 0.31 -0.4
389,920 + PfGW456L13_334 0.31 +0.1
389,977 + PfGW456L13_334 0.40 -0.6
389,977 + PfGW456L13_334 0.40 -0.3
389,977 + PfGW456L13_334 0.40 +0.1
389,977 + PfGW456L13_334 0.40 -1.3
389,977 + PfGW456L13_334 0.40 -1.4
389,977 + PfGW456L13_334 0.40 -0.5
389,978 - PfGW456L13_334 0.41 +0.9
389,978 - PfGW456L13_334 0.41 -0.2
389,978 - PfGW456L13_334 0.41 -0.9
390,029 + PfGW456L13_334 0.49 -1.2
390,030 - PfGW456L13_334 0.49 -0.2
390,030 - PfGW456L13_334 0.49 +0.1
390,340 + -0.1
390,341 - -0.1
391,466 + -0.5
391,466 + -0.0
391,466 + -0.1
391,466 + -1.4
391,467 - +0.3
391,467 - +0.1
391,467 - +0.8
391,467 - -0.1
391,467 - -1.2
391,470 - +0.2
391,470 - -0.1
391,814 - PfGW456L13_336 0.15 -0.4
391,882 + PfGW456L13_336 0.20 -0.8
391,882 + PfGW456L13_336 0.20 +0.5
391,882 + PfGW456L13_336 0.20 +0.1
391,882 + PfGW456L13_336 0.20 +1.6
391,933 + PfGW456L13_336 0.23 -0.1
391,933 + PfGW456L13_336 0.23 +0.7
391,933 + PfGW456L13_336 0.23 +0.2
391,933 + PfGW456L13_336 0.23 +0.8
391,934 - PfGW456L13_336 0.24 -0.7
391,934 - PfGW456L13_336 0.24 +1.6
391,934 - PfGW456L13_336 0.24 -0.9
391,934 - PfGW456L13_336 0.24 -0.1
392,066 - PfGW456L13_336 0.33 +0.0
392,206 + PfGW456L13_336 0.43 +0.8
392,206 + PfGW456L13_336 0.43 -0.2
392,206 + PfGW456L13_336 0.43 +0.2
392,206 + PfGW456L13_336 0.43 -0.0
392,206 + PfGW456L13_336 0.43 +0.2
392,206 + PfGW456L13_336 0.43 +1.2
392,206 + PfGW456L13_336 0.43 -0.0
392,207 - PfGW456L13_336 0.43 +0.3
392,207 - PfGW456L13_336 0.43 +0.5
392,289 + PfGW456L13_336 0.49 -1.3
392,289 + PfGW456L13_336 0.49 +0.4
392,289 + PfGW456L13_336 0.49 +0.3
392,289 + PfGW456L13_336 0.49 +0.1
392,290 - PfGW456L13_336 0.49 -0.3
392,290 - PfGW456L13_336 0.49 -1.0
392,290 - PfGW456L13_336 0.49 +0.6
392,290 - PfGW456L13_336 0.49 +1.1
392,290 - PfGW456L13_336 0.49 -1.5
392,290 - PfGW456L13_336 0.49 -1.0
392,290 - PfGW456L13_336 0.49 -0.5
392,290 - PfGW456L13_336 0.49 +0.2
392,290 - PfGW456L13_336 0.49 -0.8
392,290 - PfGW456L13_336 0.49 +1.6
392,290 - PfGW456L13_336 0.49 +0.1
392,290 - PfGW456L13_336 0.49 -0.6
392,338 - PfGW456L13_336 0.53 +0.2
392,347 + PfGW456L13_336 0.54 +0.2
392,347 + PfGW456L13_336 0.54 -0.2

Or see this region's nucleotide sequence