Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3315

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3314 and PfGW456L13_3315 overlap by 8 nucleotidesPfGW456L13_3315 and PfGW456L13_3316 are separated by 119 nucleotides PfGW456L13_3314 - D-galactono-lactonase (EC 3.1.1.-) (from data), at 3,723,047 to 3,724,216 _3314 PfGW456L13_3315 - FIG00955242: hypothetical protein, at 3,724,209 to 3,724,547 _3315 PfGW456L13_3316 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 3,724,667 to 3,726,247 _3316 Position (kb) 3724 3725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3723.321 kb on + strand, within PfGW456L13_3314at 3723.322 kb on - strand, within PfGW456L13_3314at 3723.322 kb on - strand, within PfGW456L13_3314at 3723.639 kb on + strand, within PfGW456L13_3314at 3723.639 kb on + strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.640 kb on - strand, within PfGW456L13_3314at 3723.807 kb on + strand, within PfGW456L13_3314at 3723.808 kb on - strand, within PfGW456L13_3314at 3723.808 kb on - strand, within PfGW456L13_3314at 3724.092 kb on + strand, within PfGW456L13_3314at 3724.093 kb on - strand, within PfGW456L13_3314at 3724.119 kb on + strandat 3724.141 kb on - strandat 3724.316 kb on + strand, within PfGW456L13_3315at 3724.316 kb on + strand, within PfGW456L13_3315at 3724.316 kb on + strand, within PfGW456L13_3315at 3724.317 kb on - strand, within PfGW456L13_3315at 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.540 kb on + strandat 3724.541 kb on - strandat 3724.541 kb on - strandat 3724.541 kb on - strandat 3724.564 kb on - strandat 3724.620 kb on + strandat 3724.621 kb on - strandat 3724.669 kb on - strandat 3725.220 kb on + strand, within PfGW456L13_3316at 3725.221 kb on - strand, within PfGW456L13_3316

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,723,321 + PfGW456L13_3314 0.23 +0.6
3,723,322 - PfGW456L13_3314 0.24 -0.6
3,723,322 - PfGW456L13_3314 0.24 -0.1
3,723,639 + PfGW456L13_3314 0.51 -0.1
3,723,639 + PfGW456L13_3314 0.51 +0.1
3,723,640 - PfGW456L13_3314 0.51 -0.6
3,723,640 - PfGW456L13_3314 0.51 -0.0
3,723,640 - PfGW456L13_3314 0.51 +0.2
3,723,640 - PfGW456L13_3314 0.51 +0.2
3,723,807 + PfGW456L13_3314 0.65 -3.0
3,723,808 - PfGW456L13_3314 0.65 +0.1
3,723,808 - PfGW456L13_3314 0.65 +0.5
3,724,092 + PfGW456L13_3314 0.89 -2.4
3,724,093 - PfGW456L13_3314 0.89 +0.3
3,724,119 + -0.3
3,724,141 - +0.1
3,724,316 + PfGW456L13_3315 0.32 -0.7
3,724,316 + PfGW456L13_3315 0.32 -2.1
3,724,316 + PfGW456L13_3315 0.32 -0.7
3,724,317 - PfGW456L13_3315 0.32 -0.3
3,724,540 + +1.8
3,724,540 + -0.3
3,724,540 + +0.2
3,724,540 + -0.2
3,724,540 + +0.3
3,724,540 + -0.5
3,724,541 - -1.1
3,724,541 - +2.3
3,724,541 - +1.7
3,724,564 - +0.8
3,724,620 + -1.0
3,724,621 - -0.3
3,724,669 - +0.7
3,725,220 + PfGW456L13_3316 0.35 +0.9
3,725,221 - PfGW456L13_3316 0.35 -0.0

Or see this region's nucleotide sequence