Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2186

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2185 and PfGW456L13_2186 are separated by 13 nucleotidesPfGW456L13_2186 and PfGW456L13_2187 are separated by 3 nucleotides PfGW456L13_2185 - putative colanic acid biosynthesis glycosyl transferase, at 2,395,969 to 2,397,183 _2185 PfGW456L13_2186 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 2,397,197 to 2,398,234 _2186 PfGW456L13_2187 - WbjC, at 2,398,238 to 2,399,356 _2187 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -3 -2 -1 0 1at 2396.199 kb on + strand, within PfGW456L13_2185at 2396.200 kb on - strand, within PfGW456L13_2185at 2396.291 kb on + strand, within PfGW456L13_2185at 2396.302 kb on - strand, within PfGW456L13_2185at 2396.350 kb on + strand, within PfGW456L13_2185at 2396.698 kb on - strand, within PfGW456L13_2185at 2396.827 kb on + strand, within PfGW456L13_2185at 2396.828 kb on - strand, within PfGW456L13_2185at 2396.855 kb on + strand, within PfGW456L13_2185at 2397.181 kb on + strandat 2397.214 kb on + strandat 2397.256 kb on + strandat 2397.525 kb on + strand, within PfGW456L13_2186at 2397.540 kb on + strand, within PfGW456L13_2186at 2397.561 kb on + strand, within PfGW456L13_2186at 2397.574 kb on + strand, within PfGW456L13_2186at 2397.612 kb on + strand, within PfGW456L13_2186at 2397.664 kb on + strand, within PfGW456L13_2186at 2397.682 kb on + strand, within PfGW456L13_2186at 2397.756 kb on + strand, within PfGW456L13_2186at 2397.756 kb on + strand, within PfGW456L13_2186at 2397.757 kb on - strand, within PfGW456L13_2186at 2397.831 kb on - strand, within PfGW456L13_2186at 2397.897 kb on + strand, within PfGW456L13_2186at 2397.925 kb on + strand, within PfGW456L13_2186at 2397.925 kb on + strand, within PfGW456L13_2186at 2398.034 kb on + strand, within PfGW456L13_2186at 2398.070 kb on + strand, within PfGW456L13_2186

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,396,199 + PfGW456L13_2185 0.19 +0.6
2,396,200 - PfGW456L13_2185 0.19 +0.0
2,396,291 + PfGW456L13_2185 0.27 +0.1
2,396,302 - PfGW456L13_2185 0.27 -0.2
2,396,350 + PfGW456L13_2185 0.31 +0.7
2,396,698 - PfGW456L13_2185 0.60 +1.1
2,396,827 + PfGW456L13_2185 0.71 +0.5
2,396,828 - PfGW456L13_2185 0.71 +0.1
2,396,855 + PfGW456L13_2185 0.73 +0.3
2,397,181 + -0.2
2,397,214 + -1.7
2,397,256 + -0.7
2,397,525 + PfGW456L13_2186 0.32 -2.1
2,397,540 + PfGW456L13_2186 0.33 -2.4
2,397,561 + PfGW456L13_2186 0.35 -2.3
2,397,574 + PfGW456L13_2186 0.36 -1.2
2,397,612 + PfGW456L13_2186 0.40 -1.1
2,397,664 + PfGW456L13_2186 0.45 -1.2
2,397,682 + PfGW456L13_2186 0.47 +0.3
2,397,756 + PfGW456L13_2186 0.54 -0.2
2,397,756 + PfGW456L13_2186 0.54 -2.5
2,397,757 - PfGW456L13_2186 0.54 -0.9
2,397,831 - PfGW456L13_2186 0.61 -1.6
2,397,897 + PfGW456L13_2186 0.67 -2.6
2,397,925 + PfGW456L13_2186 0.70 -3.5
2,397,925 + PfGW456L13_2186 0.70 -2.5
2,398,034 + PfGW456L13_2186 0.81 -3.1
2,398,070 + PfGW456L13_2186 0.84 -1.8

Or see this region's nucleotide sequence