Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1137

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1135 and PfGW456L13_1136 are separated by 295 nucleotidesPfGW456L13_1136 and PfGW456L13_1137 overlap by 4 nucleotidesPfGW456L13_1137 and PfGW456L13_1138 are separated by 301 nucleotidesPfGW456L13_1138 and PfGW456L13_1139 are separated by 110 nucleotides PfGW456L13_1135 - RNA polymerase sigma-70 factor, ECF subfamily, at 1,261,840 to 1,262,289 _1135 PfGW456L13_1136 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 1,262,585 to 1,263,292 _1136 PfGW456L13_1137 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 1,263,289 to 1,265,181 _1137 PfGW456L13_1138 - response regulator, at 1,265,483 to 1,265,929 _1138 PfGW456L13_1139 - Malate synthase G (EC 2.3.3.9), at 1,266,040 to 1,268,217 _1139 Position (kb) 1263 1264 1265 1266Strain fitness (log2 ratio) -2 -1 0 1 2at 1262.312 kb on + strandat 1262.313 kb on - strandat 1262.313 kb on - strandat 1262.314 kb on + strandat 1262.314 kb on + strandat 1262.314 kb on + strandat 1262.314 kb on + strandat 1262.314 kb on + strandat 1262.314 kb on + strandat 1262.315 kb on - strandat 1262.315 kb on - strandat 1262.315 kb on - strandat 1262.315 kb on - strandat 1262.381 kb on - strandat 1262.427 kb on + strandat 1262.427 kb on + strandat 1262.428 kb on - strandat 1262.428 kb on - strandat 1262.428 kb on - strandat 1262.428 kb on - strandat 1262.428 kb on - strandat 1262.566 kb on + strandat 1262.807 kb on + strand, within PfGW456L13_1136at 1262.808 kb on - strand, within PfGW456L13_1136at 1262.808 kb on - strand, within PfGW456L13_1136at 1262.808 kb on - strand, within PfGW456L13_1136at 1262.821 kb on + strand, within PfGW456L13_1136at 1262.821 kb on + strand, within PfGW456L13_1136at 1262.822 kb on - strand, within PfGW456L13_1136at 1262.822 kb on - strand, within PfGW456L13_1136at 1262.822 kb on - strand, within PfGW456L13_1136at 1262.822 kb on - strand, within PfGW456L13_1136at 1262.822 kb on - strand, within PfGW456L13_1136at 1262.857 kb on - strand, within PfGW456L13_1136at 1263.137 kb on - strand, within PfGW456L13_1136at 1263.137 kb on - strand, within PfGW456L13_1136at 1263.292 kb on + strandat 1263.292 kb on + strandat 1263.293 kb on - strandat 1263.293 kb on - strandat 1263.293 kb on - strandat 1263.293 kb on - strandat 1263.392 kb on - strandat 1263.427 kb on + strandat 1263.428 kb on - strandat 1263.428 kb on - strandat 1263.428 kb on - strandat 1263.428 kb on - strandat 1263.428 kb on - strandat 1263.467 kb on + strandat 1263.467 kb on + strandat 1263.467 kb on + strandat 1263.468 kb on - strandat 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.815 kb on + strand, within PfGW456L13_1137at 1263.816 kb on - strand, within PfGW456L13_1137at 1263.816 kb on - strand, within PfGW456L13_1137at 1263.816 kb on - strand, within PfGW456L13_1137at 1263.816 kb on - strand, within PfGW456L13_1137at 1263.816 kb on - strand, within PfGW456L13_1137at 1263.924 kb on + strand, within PfGW456L13_1137at 1263.924 kb on + strand, within PfGW456L13_1137at 1263.925 kb on - strand, within PfGW456L13_1137at 1263.925 kb on - strand, within PfGW456L13_1137at 1264.484 kb on + strand, within PfGW456L13_1137at 1264.484 kb on + strand, within PfGW456L13_1137at 1264.484 kb on + strand, within PfGW456L13_1137at 1264.484 kb on + strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.485 kb on - strand, within PfGW456L13_1137at 1264.962 kb on + strand, within PfGW456L13_1137at 1264.970 kb on - strand, within PfGW456L13_1137at 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.015 kb on + strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.016 kb on - strandat 1265.070 kb on - strandat 1265.099 kb on + strandat 1265.099 kb on + strandat 1265.099 kb on + strandat 1265.099 kb on + strandat 1265.100 kb on - strandat 1265.217 kb on + strandat 1265.217 kb on + strandat 1265.218 kb on - strandat 1265.231 kb on - strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.309 kb on + strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.310 kb on - strandat 1265.315 kb on + strandat 1265.315 kb on + strandat 1265.315 kb on + strandat 1265.315 kb on + strandat 1265.316 kb on - strandat 1265.316 kb on - strandat 1265.316 kb on - strandat 1265.316 kb on - strandat 1265.316 kb on - strandat 1265.316 kb on - strandat 1265.319 kb on + strandat 1265.320 kb on - strandat 1265.330 kb on + strandat 1265.330 kb on + strandat 1265.331 kb on - strandat 1265.354 kb on + strandat 1265.355 kb on - strandat 1265.355 kb on - strandat 1265.418 kb on + strandat 1265.429 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.472 kb on + strandat 1265.473 kb on - strandat 1265.473 kb on - strandat 1265.473 kb on - strandat 1265.473 kb on - strandat 1265.473 kb on - strandat 1265.473 kb on - strandat 1265.498 kb on - strandat 1265.632 kb on + strand, within PfGW456L13_1138at 1265.633 kb on - strand, within PfGW456L13_1138at 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.927 kb on + strandat 1265.928 kb on - strandat 1265.928 kb on - strandat 1265.928 kb on - strandat 1266.041 kb on + strandat 1266.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,262,312 + -0.1
1,262,313 - +0.3
1,262,313 - -0.2
1,262,314 + -0.3
1,262,314 + -0.1
1,262,314 + -0.5
1,262,314 + -0.5
1,262,314 + +0.0
1,262,314 + -0.5
1,262,315 - +0.3
1,262,315 - -0.4
1,262,315 - -0.9
1,262,315 - -0.4
1,262,381 - -0.4
1,262,427 + -0.2
1,262,427 + +0.5
1,262,428 - +0.5
1,262,428 - +0.3
1,262,428 - +0.0
1,262,428 - +1.1
1,262,428 - -0.6
1,262,566 + -1.9
1,262,807 + PfGW456L13_1136 0.31 -0.1
1,262,808 - PfGW456L13_1136 0.31 -0.3
1,262,808 - PfGW456L13_1136 0.31 -0.4
1,262,808 - PfGW456L13_1136 0.31 +0.8
1,262,821 + PfGW456L13_1136 0.33 -1.1
1,262,821 + PfGW456L13_1136 0.33 +0.5
1,262,822 - PfGW456L13_1136 0.33 -1.1
1,262,822 - PfGW456L13_1136 0.33 +0.6
1,262,822 - PfGW456L13_1136 0.33 +0.1
1,262,822 - PfGW456L13_1136 0.33 -1.0
1,262,822 - PfGW456L13_1136 0.33 -0.6
1,262,857 - PfGW456L13_1136 0.38 +1.0
1,263,137 - PfGW456L13_1136 0.78 -1.2
1,263,137 - PfGW456L13_1136 0.78 -0.6
1,263,292 + +0.4
1,263,292 + +0.5
1,263,293 - +1.4
1,263,293 - -0.7
1,263,293 - -0.1
1,263,293 - -0.0
1,263,392 - -0.1
1,263,427 + +1.1
1,263,428 - +1.0
1,263,428 - -0.3
1,263,428 - -0.1
1,263,428 - -0.9
1,263,428 - +0.4
1,263,467 + -0.5
1,263,467 + -0.3
1,263,467 + +0.0
1,263,468 - +0.8
1,263,815 + PfGW456L13_1137 0.28 -0.7
1,263,815 + PfGW456L13_1137 0.28 +0.0
1,263,815 + PfGW456L13_1137 0.28 +0.4
1,263,815 + PfGW456L13_1137 0.28 +0.3
1,263,815 + PfGW456L13_1137 0.28 -1.9
1,263,815 + PfGW456L13_1137 0.28 -0.1
1,263,815 + PfGW456L13_1137 0.28 -1.4
1,263,816 - PfGW456L13_1137 0.28 -1.7
1,263,816 - PfGW456L13_1137 0.28 -0.4
1,263,816 - PfGW456L13_1137 0.28 -1.3
1,263,816 - PfGW456L13_1137 0.28 -0.0
1,263,816 - PfGW456L13_1137 0.28 -0.0
1,263,924 + PfGW456L13_1137 0.34 -0.5
1,263,924 + PfGW456L13_1137 0.34 +0.3
1,263,925 - PfGW456L13_1137 0.34 +1.1
1,263,925 - PfGW456L13_1137 0.34 -0.8
1,264,484 + PfGW456L13_1137 0.63 -0.3
1,264,484 + PfGW456L13_1137 0.63 -0.0
1,264,484 + PfGW456L13_1137 0.63 -1.4
1,264,484 + PfGW456L13_1137 0.63 -0.4
1,264,485 - PfGW456L13_1137 0.63 -0.0
1,264,485 - PfGW456L13_1137 0.63 +0.2
1,264,485 - PfGW456L13_1137 0.63 +0.5
1,264,485 - PfGW456L13_1137 0.63 -0.4
1,264,485 - PfGW456L13_1137 0.63 -0.7
1,264,485 - PfGW456L13_1137 0.63 +0.8
1,264,962 + PfGW456L13_1137 0.88 +0.1
1,264,970 - PfGW456L13_1137 0.89 -0.8
1,265,015 + +1.3
1,265,015 + -1.1
1,265,015 + +0.6
1,265,015 + -0.3
1,265,015 + +0.4
1,265,015 + +0.8
1,265,015 + -0.7
1,265,015 + -0.1
1,265,015 + +0.1
1,265,015 + -0.1
1,265,015 + -0.4
1,265,015 + +0.6
1,265,015 + -0.4
1,265,015 + +1.8
1,265,015 + -0.8
1,265,015 + -0.8
1,265,015 + -1.2
1,265,015 + -1.5
1,265,015 + +0.9
1,265,015 + +1.7
1,265,016 - +0.1
1,265,016 - +2.1
1,265,016 - -0.5
1,265,016 - -1.6
1,265,016 - +1.5
1,265,016 - +0.7
1,265,016 - +0.1
1,265,016 - -0.3
1,265,016 - +0.2
1,265,016 - +0.3
1,265,016 - +0.4
1,265,016 - -1.2
1,265,016 - -0.9
1,265,016 - +0.0
1,265,016 - -1.0
1,265,016 - -1.3
1,265,016 - -0.1
1,265,016 - +0.4
1,265,016 - -0.2
1,265,016 - +0.2
1,265,016 - -0.9
1,265,016 - -1.2
1,265,016 - +0.2
1,265,070 - +0.1
1,265,099 + -0.5
1,265,099 + +0.4
1,265,099 + +0.4
1,265,099 + -0.3
1,265,100 - +0.2
1,265,217 + +0.2
1,265,217 + -0.2
1,265,218 - +0.6
1,265,231 - +1.0
1,265,309 + -1.3
1,265,309 + -0.5
1,265,309 + -0.2
1,265,309 + -0.0
1,265,309 + -1.2
1,265,309 + +0.3
1,265,309 + -0.9
1,265,309 + +0.4
1,265,310 - -0.4
1,265,310 - +0.4
1,265,310 - -1.2
1,265,310 - -0.6
1,265,310 - +0.9
1,265,310 - +0.0
1,265,310 - +0.2
1,265,310 - +0.5
1,265,310 - -0.6
1,265,310 - -0.9
1,265,310 - +0.2
1,265,310 - -0.2
1,265,315 + -0.1
1,265,315 + -1.2
1,265,315 + -1.1
1,265,315 + +0.6
1,265,316 - +0.5
1,265,316 - +0.8
1,265,316 - -0.4
1,265,316 - -0.1
1,265,316 - -0.1
1,265,316 - +1.4
1,265,319 + -0.3
1,265,320 - +0.2
1,265,330 + -0.9
1,265,330 + +0.6
1,265,331 - +0.1
1,265,354 + +0.2
1,265,355 - -1.4
1,265,355 - +0.4
1,265,418 + -0.5
1,265,429 + -1.0
1,265,472 + +0.6
1,265,472 + +1.1
1,265,472 + -0.3
1,265,472 + -0.8
1,265,472 + +0.3
1,265,472 + -1.0
1,265,472 + -0.6
1,265,473 - +0.1
1,265,473 - -0.6
1,265,473 - +0.4
1,265,473 - -0.3
1,265,473 - -0.6
1,265,473 - -0.3
1,265,498 - +0.3
1,265,632 + PfGW456L13_1138 0.33 +0.3
1,265,633 - PfGW456L13_1138 0.34 +1.4
1,265,927 + -1.0
1,265,927 + -0.1
1,265,927 + +0.4
1,265,927 + -0.0
1,265,927 + -1.0
1,265,927 + -0.5
1,265,927 + +0.2
1,265,928 - -0.6
1,265,928 - +0.3
1,265,928 - -0.5
1,266,041 + -1.3
1,266,042 - -0.4

Or see this region's nucleotide sequence