Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1135 and PfGW456L13_1136 are separated by 295 nucleotides PfGW456L13_1136 and PfGW456L13_1137 overlap by 4 nucleotides PfGW456L13_1137 and PfGW456L13_1138 are separated by 301 nucleotides PfGW456L13_1138 and PfGW456L13_1139 are separated by 110 nucleotides
PfGW456L13_1135 - RNA polymerase sigma-70 factor, ECF subfamily, at 1,261,840 to 1,262,289
_1135
PfGW456L13_1136 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 1,262,585 to 1,263,292
_1136
PfGW456L13_1137 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 1,263,289 to 1,265,181
_1137
PfGW456L13_1138 - response regulator, at 1,265,483 to 1,265,929
_1138
PfGW456L13_1139 - Malate synthase G (EC 2.3.3.9), at 1,266,040 to 1,268,217
_1139
Position (kb)
1263
1264
1265
1266 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1262.312 kb on + strand at 1262.313 kb on - strand at 1262.313 kb on - strand at 1262.314 kb on + strand at 1262.314 kb on + strand at 1262.314 kb on + strand at 1262.314 kb on + strand at 1262.314 kb on + strand at 1262.314 kb on + strand at 1262.315 kb on - strand at 1262.315 kb on - strand at 1262.315 kb on - strand at 1262.315 kb on - strand at 1262.381 kb on - strand at 1262.427 kb on + strand at 1262.427 kb on + strand at 1262.428 kb on - strand at 1262.428 kb on - strand at 1262.428 kb on - strand at 1262.428 kb on - strand at 1262.428 kb on - strand at 1262.566 kb on + strand at 1262.807 kb on + strand, within PfGW456L13_1136 at 1262.808 kb on - strand, within PfGW456L13_1136 at 1262.808 kb on - strand, within PfGW456L13_1136 at 1262.808 kb on - strand, within PfGW456L13_1136 at 1262.821 kb on + strand, within PfGW456L13_1136 at 1262.821 kb on + strand, within PfGW456L13_1136 at 1262.822 kb on - strand, within PfGW456L13_1136 at 1262.822 kb on - strand, within PfGW456L13_1136 at 1262.822 kb on - strand, within PfGW456L13_1136 at 1262.822 kb on - strand, within PfGW456L13_1136 at 1262.822 kb on - strand, within PfGW456L13_1136 at 1262.857 kb on - strand, within PfGW456L13_1136 at 1263.137 kb on - strand, within PfGW456L13_1136 at 1263.137 kb on - strand, within PfGW456L13_1136 at 1263.292 kb on + strand at 1263.292 kb on + strand at 1263.293 kb on - strand at 1263.293 kb on - strand at 1263.293 kb on - strand at 1263.293 kb on - strand at 1263.392 kb on - strand at 1263.427 kb on + strand at 1263.428 kb on - strand at 1263.428 kb on - strand at 1263.428 kb on - strand at 1263.428 kb on - strand at 1263.428 kb on - strand at 1263.467 kb on + strand at 1263.467 kb on + strand at 1263.467 kb on + strand at 1263.468 kb on - strand at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.815 kb on + strand, within PfGW456L13_1137 at 1263.816 kb on - strand, within PfGW456L13_1137 at 1263.816 kb on - strand, within PfGW456L13_1137 at 1263.816 kb on - strand, within PfGW456L13_1137 at 1263.816 kb on - strand, within PfGW456L13_1137 at 1263.816 kb on - strand, within PfGW456L13_1137 at 1263.924 kb on + strand, within PfGW456L13_1137 at 1263.924 kb on + strand, within PfGW456L13_1137 at 1263.925 kb on - strand, within PfGW456L13_1137 at 1263.925 kb on - strand, within PfGW456L13_1137 at 1264.484 kb on + strand, within PfGW456L13_1137 at 1264.484 kb on + strand, within PfGW456L13_1137 at 1264.484 kb on + strand, within PfGW456L13_1137 at 1264.484 kb on + strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.485 kb on - strand, within PfGW456L13_1137 at 1264.962 kb on + strand, within PfGW456L13_1137 at 1264.970 kb on - strand, within PfGW456L13_1137 at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.015 kb on + strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.016 kb on - strand at 1265.070 kb on - strand at 1265.099 kb on + strand at 1265.099 kb on + strand at 1265.099 kb on + strand at 1265.099 kb on + strand at 1265.100 kb on - strand at 1265.217 kb on + strand at 1265.217 kb on + strand at 1265.218 kb on - strand at 1265.231 kb on - strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.309 kb on + strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.310 kb on - strand at 1265.315 kb on + strand at 1265.315 kb on + strand at 1265.315 kb on + strand at 1265.315 kb on + strand at 1265.316 kb on - strand at 1265.316 kb on - strand at 1265.316 kb on - strand at 1265.316 kb on - strand at 1265.316 kb on - strand at 1265.316 kb on - strand at 1265.319 kb on + strand at 1265.320 kb on - strand at 1265.330 kb on + strand at 1265.330 kb on + strand at 1265.331 kb on - strand at 1265.354 kb on + strand at 1265.355 kb on - strand at 1265.355 kb on - strand at 1265.418 kb on + strand at 1265.429 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.472 kb on + strand at 1265.473 kb on - strand at 1265.473 kb on - strand at 1265.473 kb on - strand at 1265.473 kb on - strand at 1265.473 kb on - strand at 1265.473 kb on - strand at 1265.498 kb on - strand at 1265.632 kb on + strand, within PfGW456L13_1138 at 1265.633 kb on - strand, within PfGW456L13_1138 at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.927 kb on + strand at 1265.928 kb on - strand at 1265.928 kb on - strand at 1265.928 kb on - strand at 1266.041 kb on + strand at 1266.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,262,312 + -0.1 1,262,313 - +0.3 1,262,313 - -0.2 1,262,314 + -0.3 1,262,314 + -0.1 1,262,314 + -0.5 1,262,314 + -0.5 1,262,314 + +0.0 1,262,314 + -0.5 1,262,315 - +0.3 1,262,315 - -0.4 1,262,315 - -0.9 1,262,315 - -0.4 1,262,381 - -0.4 1,262,427 + -0.2 1,262,427 + +0.5 1,262,428 - +0.5 1,262,428 - +0.3 1,262,428 - +0.0 1,262,428 - +1.1 1,262,428 - -0.6 1,262,566 + -1.9 1,262,807 + PfGW456L13_1136 0.31 -0.1 1,262,808 - PfGW456L13_1136 0.31 -0.3 1,262,808 - PfGW456L13_1136 0.31 -0.4 1,262,808 - PfGW456L13_1136 0.31 +0.8 1,262,821 + PfGW456L13_1136 0.33 -1.1 1,262,821 + PfGW456L13_1136 0.33 +0.5 1,262,822 - PfGW456L13_1136 0.33 -1.1 1,262,822 - PfGW456L13_1136 0.33 +0.6 1,262,822 - PfGW456L13_1136 0.33 +0.1 1,262,822 - PfGW456L13_1136 0.33 -1.0 1,262,822 - PfGW456L13_1136 0.33 -0.6 1,262,857 - PfGW456L13_1136 0.38 +1.0 1,263,137 - PfGW456L13_1136 0.78 -1.2 1,263,137 - PfGW456L13_1136 0.78 -0.6 1,263,292 + +0.4 1,263,292 + +0.5 1,263,293 - +1.4 1,263,293 - -0.7 1,263,293 - -0.1 1,263,293 - -0.0 1,263,392 - -0.1 1,263,427 + +1.1 1,263,428 - +1.0 1,263,428 - -0.3 1,263,428 - -0.1 1,263,428 - -0.9 1,263,428 - +0.4 1,263,467 + -0.5 1,263,467 + -0.3 1,263,467 + +0.0 1,263,468 - +0.8 1,263,815 + PfGW456L13_1137 0.28 -0.7 1,263,815 + PfGW456L13_1137 0.28 +0.0 1,263,815 + PfGW456L13_1137 0.28 +0.4 1,263,815 + PfGW456L13_1137 0.28 +0.3 1,263,815 + PfGW456L13_1137 0.28 -1.9 1,263,815 + PfGW456L13_1137 0.28 -0.1 1,263,815 + PfGW456L13_1137 0.28 -1.4 1,263,816 - PfGW456L13_1137 0.28 -1.7 1,263,816 - PfGW456L13_1137 0.28 -0.4 1,263,816 - PfGW456L13_1137 0.28 -1.3 1,263,816 - PfGW456L13_1137 0.28 -0.0 1,263,816 - PfGW456L13_1137 0.28 -0.0 1,263,924 + PfGW456L13_1137 0.34 -0.5 1,263,924 + PfGW456L13_1137 0.34 +0.3 1,263,925 - PfGW456L13_1137 0.34 +1.1 1,263,925 - PfGW456L13_1137 0.34 -0.8 1,264,484 + PfGW456L13_1137 0.63 -0.3 1,264,484 + PfGW456L13_1137 0.63 -0.0 1,264,484 + PfGW456L13_1137 0.63 -1.4 1,264,484 + PfGW456L13_1137 0.63 -0.4 1,264,485 - PfGW456L13_1137 0.63 -0.0 1,264,485 - PfGW456L13_1137 0.63 +0.2 1,264,485 - PfGW456L13_1137 0.63 +0.5 1,264,485 - PfGW456L13_1137 0.63 -0.4 1,264,485 - PfGW456L13_1137 0.63 -0.7 1,264,485 - PfGW456L13_1137 0.63 +0.8 1,264,962 + PfGW456L13_1137 0.88 +0.1 1,264,970 - PfGW456L13_1137 0.89 -0.8 1,265,015 + +1.3 1,265,015 + -1.1 1,265,015 + +0.6 1,265,015 + -0.3 1,265,015 + +0.4 1,265,015 + +0.8 1,265,015 + -0.7 1,265,015 + -0.1 1,265,015 + +0.1 1,265,015 + -0.1 1,265,015 + -0.4 1,265,015 + +0.6 1,265,015 + -0.4 1,265,015 + +1.8 1,265,015 + -0.8 1,265,015 + -0.8 1,265,015 + -1.2 1,265,015 + -1.5 1,265,015 + +0.9 1,265,015 + +1.7 1,265,016 - +0.1 1,265,016 - +2.1 1,265,016 - -0.5 1,265,016 - -1.6 1,265,016 - +1.5 1,265,016 - +0.7 1,265,016 - +0.1 1,265,016 - -0.3 1,265,016 - +0.2 1,265,016 - +0.3 1,265,016 - +0.4 1,265,016 - -1.2 1,265,016 - -0.9 1,265,016 - +0.0 1,265,016 - -1.0 1,265,016 - -1.3 1,265,016 - -0.1 1,265,016 - +0.4 1,265,016 - -0.2 1,265,016 - +0.2 1,265,016 - -0.9 1,265,016 - -1.2 1,265,016 - +0.2 1,265,070 - +0.1 1,265,099 + -0.5 1,265,099 + +0.4 1,265,099 + +0.4 1,265,099 + -0.3 1,265,100 - +0.2 1,265,217 + +0.2 1,265,217 + -0.2 1,265,218 - +0.6 1,265,231 - +1.0 1,265,309 + -1.3 1,265,309 + -0.5 1,265,309 + -0.2 1,265,309 + -0.0 1,265,309 + -1.2 1,265,309 + +0.3 1,265,309 + -0.9 1,265,309 + +0.4 1,265,310 - -0.4 1,265,310 - +0.4 1,265,310 - -1.2 1,265,310 - -0.6 1,265,310 - +0.9 1,265,310 - +0.0 1,265,310 - +0.2 1,265,310 - +0.5 1,265,310 - -0.6 1,265,310 - -0.9 1,265,310 - +0.2 1,265,310 - -0.2 1,265,315 + -0.1 1,265,315 + -1.2 1,265,315 + -1.1 1,265,315 + +0.6 1,265,316 - +0.5 1,265,316 - +0.8 1,265,316 - -0.4 1,265,316 - -0.1 1,265,316 - -0.1 1,265,316 - +1.4 1,265,319 + -0.3 1,265,320 - +0.2 1,265,330 + -0.9 1,265,330 + +0.6 1,265,331 - +0.1 1,265,354 + +0.2 1,265,355 - -1.4 1,265,355 - +0.4 1,265,418 + -0.5 1,265,429 + -1.0 1,265,472 + +0.6 1,265,472 + +1.1 1,265,472 + -0.3 1,265,472 + -0.8 1,265,472 + +0.3 1,265,472 + -1.0 1,265,472 + -0.6 1,265,473 - +0.1 1,265,473 - -0.6 1,265,473 - +0.4 1,265,473 - -0.3 1,265,473 - -0.6 1,265,473 - -0.3 1,265,498 - +0.3 1,265,632 + PfGW456L13_1138 0.33 +0.3 1,265,633 - PfGW456L13_1138 0.34 +1.4 1,265,927 + -1.0 1,265,927 + -0.1 1,265,927 + +0.4 1,265,927 + -0.0 1,265,927 + -1.0 1,265,927 + -0.5 1,265,927 + +0.2 1,265,928 - -0.6 1,265,928 - +0.3 1,265,928 - -0.5 1,266,041 + -1.3 1,266,042 - -0.4
Or see this region's nucleotide sequence