Strain Fitness in Pseudomonas putida KT2440 around PP_5603

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,928,977	+		PP_3464	0.39	+0.3
3,928,980	+				+1.6
3,928,980	+		PP_3464	0.39	-0.2
3,928,980	+		PP_3464	0.39	+0.8
3,928,981	-		PP_3464	0.39	-0.5
3,928,981	-		PP_3464	0.39	-0.5
3,929,083	-		PP_3464	0.47	-1.1
3,929,382	+		PP_3464	0.70	+0.3
3,929,424	+		PP_3464	0.73	+0.2
3,929,424	+		PP_3464	0.73	-0.2
3,929,425	-		PP_3464	0.73	+0.5
3,929,425	-		PP_3464	0.73	+1.4
3,929,425	-		PP_3464	0.73	-0.2
3,929,478	+		PP_3464	0.77	-1.4
3,929,479	-		PP_3464	0.77	+2.0
3,929,519	-		PP_3464	0.80	+0.8
3,929,565	+		PP_3464	0.84	-0.6
3,929,565	+		PP_3464	0.84	+0.3
3,929,566	-		PP_3464	0.84	-1.7
3,929,628	+		PP_3464	0.89	-1.0
3,929,628	+		PP_3464	0.89	-0.1
3,929,628	+		PP_3464	0.89	+1.0
3,929,628	+		PP_3464	0.89	+0.3
3,929,629	-		PP_3464	0.89	+0.2
3,929,629	-		PP_3464	0.89	+1.0
3,929,629	-		PP_3464	0.89	+0.1
3,929,629	-		PP_3464	0.89	-0.8
3,929,682	+				+0.2
3,929,683	-				-2.3
3,929,715	-				+1.1
3,929,715	-				-0.8
3,929,885	-				-0.3
3,929,911	+				+0.6
3,929,912	-				+0.7
3,930,140	+		PP_5603	0.25	-0.2
3,930,243	+		PP_5603	0.33	-0.6
3,930,243	+		PP_5603	0.33	-0.8
3,930,243	+		PP_5603	0.33	-1.1
3,930,244	-		PP_5603	0.33	-2.1
3,930,244	-		PP_5603	0.33	-0.2
3,930,473	+		PP_5603	0.51	-0.1
3,930,474	-		PP_5603	0.51	-0.8
3,931,272	+		PP_5604	0.25	-2.3
3,931,272	+		PP_5604	0.25	-0.2
3,931,362	+		PP_5604	0.39	+1.9