Strain Fitness in Pseudomonas putida KT2440 around PP_5575

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,509,242	+		PP_3106	0.47	+1.0
3,509,312	+		PP_3106	0.51	-0.1
3,509,336	+		PP_3106	0.52	+0.5
3,509,369	-		PP_3106	0.54	+0.1
3,509,411	+		PP_3106	0.56	-1.0
3,509,411	+		PP_3106	0.56	+0.4
3,509,411	+		PP_3106	0.56	+0.8
3,509,411	+		PP_3106	0.56	+0.8
3,509,412	-		PP_3106	0.56	+0.3
3,509,412	-		PP_3106	0.56	+0.2
3,509,412	-		PP_3106	0.56	+1.3
3,509,412	-		PP_3106	0.56	-0.6
3,509,640	+		PP_3106	0.68	+0.3
3,509,641	-		PP_3106	0.68	+0.4
3,509,765	+		PP_3106	0.75	+0.3
3,509,765	+		PP_3106	0.75	+0.2
3,509,765	+		PP_3106	0.75	+0.4
3,509,766	-		PP_3106	0.75	-0.7
3,509,766	-		PP_3106	0.75	+0.6
3,509,981	-		PP_3106	0.87	+0.5
3,509,981	-		PP_3106	0.87	+1.1
3,509,992	+		PP_3106	0.87	-0.5
3,509,992	+		PP_3106	0.87	-0.0
3,509,993	-		PP_3106	0.87	+1.0
3,509,993	-		PP_3106	0.87	+0.0
3,510,047	+				+0.8
3,510,047	+				+0.3
3,510,047	+				+0.1
3,510,047	+				+1.2
3,510,047	+				-1.7
3,510,048	-				+0.8
3,510,243	+				+1.1
3,510,243	+				+0.8
3,510,244	-				-0.3
3,510,244	-				+1.3
3,510,244	-				-0.0
3,510,244	-				+0.8
3,510,244	-				-0.2
3,510,244	-				+0.0
3,510,244	-				+0.6
3,510,259	-				+0.2
3,510,511	+		PP_5575	0.46	+0.8
3,510,512	-		PP_5575	0.46	+0.7
3,510,872	+		PP_3107	0.13	+0.4
3,511,012	+		PP_3107	0.40	+0.5
3,511,012	+		PP_3107	0.40	+0.1
3,511,013	-		PP_3107	0.40	-0.2
3,511,013	-		PP_3107	0.40	-0.5
3,511,013	-		PP_3107	0.40	+1.1
3,511,130	-		PP_3107	0.62	+0.7
3,511,130	-		PP_3107	0.62	+1.2
3,511,130	-		PP_3107	0.62	+1.6
3,511,130	-		PP_3107	0.62	-2.0
3,511,133	-		PP_3107	0.63	+0.4
3,511,133	-		PP_3107	0.63	-0.9
3,511,133	-		PP_3107	0.63	-0.0
3,511,364	+				+0.3
3,511,364	+				-1.4
3,511,533	-				+0.4
3,511,539	+				+0.8
3,511,539	+				+1.8
3,511,540	-				+0.3
3,511,540	-				+0.4
3,511,540	-				+0.6
3,511,540	-				+0.3
3,511,566	-				+0.3
3,511,786	+		PP_3108	0.11	-0.1
3,511,786	+		PP_3108	0.11	-0.7
3,511,787	-		PP_3108	0.11	+0.0