Strain Fitness in Pseudomonas putida KT2440 around PP_5571

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,501,770	+		PP_5568	0.22	+0.0
3,501,804	+		PP_5568	0.27	+0.4
3,501,805	-		PP_5568	0.27	+0.3
3,501,931	+		PP_5568	0.45	+0.9
3,501,957	-		PP_5568	0.49	+0.2
3,502,005	+		PP_5568	0.56	-0.0
3,502,006	-				-0.7
3,502,011	+		PP_5568	0.57	-0.5
3,502,097	+		PP_5568	0.69	+0.7
3,502,097	+		PP_5568	0.69	+0.7
3,502,194	+		PP_5568	0.83	+1.6
3,502,226	+		PP_5568	0.88	-1.2
3,502,247	+				+0.7
3,502,260	+				-0.1
3,502,320	+				-0.5
3,502,320	+				-0.4
3,502,392	+		PP_5569	0.23	+1.0
3,502,402	-		PP_5569	0.27	+0.7
3,502,414	-		PP_5569	0.33	+0.6
3,502,478	-		PP_5569	0.65	-1.2
3,502,478	-				-0.2
3,502,481	+		PP_5569	0.66	-1.5
3,502,520	-		PP_5569	0.85	-0.6
3,502,522	-		PP_5569	0.86	+0.5
3,502,593	+				-0.2
3,502,852	-		PP_5571	0.47	-1.3
3,503,026	-				-0.0
3,503,069	-		PP_5572	0.16	-0.3
3,503,154	+		PP_5572	0.46	+1.8
3,503,169	+		PP_5572	0.51	-0.6
3,503,169	+		PP_5572	0.51	+0.3
3,503,195	-		PP_5572	0.61	-1.0
3,503,427	-				+0.3
3,503,454	-				+0.4
3,503,454	-				+1.4
3,503,586	+				-0.3
3,503,608	-				+0.1
3,503,701	+				-0.0
3,503,762	-				-2.0
3,503,803	-				+0.3
3,503,980	+				-0.0
3,504,010	+				-1.3