Strain Fitness in Pseudomonas putida KT2440 around PP_5551

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
3,410,541	-		PP_3024	0.48	+1.4
3,410,731	+		PP_3024	0.64	+2.2
3,410,732	-		PP_3024	0.64	+2.4
3,410,793	+		PP_3024	0.69	+2.1
3,410,803	+		PP_3024	0.70	+1.5
3,410,804	-		PP_3024	0.70	+2.1
3,410,864	-		PP_3024	0.75	+3.3
3,411,058	+				+2.5
3,411,062	+				+1.3
3,411,062	+				+3.0
3,411,206	+				+3.6
3,411,757	-		PP_5551	0.51	+2.1
3,411,870	+		PP_5551	0.73	+1.5
3,411,871	-		PP_5551	0.73	+1.6
3,411,897	+		PP_5551	0.78	+2.9
3,411,898	-		PP_5551	0.78	+2.1
3,411,930	+		PP_5551	0.84	+2.6
3,411,931	-		PP_5551	0.85	+2.2
3,411,936	+		PP_5551	0.86	+2.3
3,411,952	-		PP_5551	0.89	+1.6
3,411,952	-		PP_5551	0.89	+2.0
3,411,984	+				+2.5
3,411,984	+				+1.9
3,412,015	+				+0.8
3,412,015	+				-0.4
3,412,068	-				+0.2
3,412,108	+				-0.3
3,412,108	+				-0.7
3,412,108	+				-1.6
3,412,109	-				-0.6
3,412,109	-				+0.1
3,412,109	-				+0.4
3,412,114	+				-0.3
3,412,132	+				+0.2
3,412,133	-				+0.1
3,412,166	-				-0.9
3,412,183	+				+0.2
3,412,184	-				-0.0
3,412,205	+				-0.9
3,412,206	-				+0.6
3,412,331	+		PP_3025	0.20	-0.4
3,412,332	-		PP_3025	0.21	+0.5
3,412,501	+		PP_3025	0.48	-0.6
3,412,572	-		PP_3025	0.59	+0.4
3,412,607	+		PP_3025	0.65	-1.6
3,412,613	-		PP_3025	0.66	+0.1
3,412,663	+		PP_3025	0.74	-1.6
3,412,663	+		PP_3025	0.74	-0.6
3,412,685	-		PP_3025	0.77	-0.6
3,412,725	-		PP_3025	0.84	-1.0
3,412,795	+				+0.0
3,412,801	+				-0.1
3,412,836	+				-1.5
3,412,903	-				+1.4
3,412,949	+				+0.2
3,412,950	-				+0.7
3,412,952	+				-0.9
3,412,952	+				-0.3
3,412,952	+				+0.2
3,412,952	+				-0.5
3,412,953	-				+0.8
3,412,953	-				-0.4
3,412,954	+				-0.3
3,412,954	+				-0.9
3,412,955	-				+0.1
3,412,955	-				-0.0
3,412,955	-				+0.4
3,412,955	-				+1.7
3,412,956	+				-1.1
3,412,956	+				-0.3
3,412,956	+				+0.7
3,412,956	+				+0.1
3,412,957	-				+0.7
3,412,957	-				+0.6
3,412,990	+				+1.2
3,412,990	+				+0.0
3,412,991	-				-0.8
3,412,991	-				+1.9
3,412,991	-				+2.4