Strain Fitness in Pseudomonas putida KT2440 around PP_5284

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
6,032,089	+		PP_5283	0.59	+0.1
6,032,089	+		PP_5283	0.59	-0.7
6,032,090	-		PP_5283	0.59	+0.1
6,032,148	+		PP_5283	0.63	+0.6
6,032,149	-		PP_5283	0.63	-1.1
6,032,159	-		PP_5283	0.64	-1.0
6,032,244	+		PP_5283	0.69	+0.2
6,032,244	+		PP_5283	0.69	-0.1
6,032,337	+		PP_5283	0.75	+0.2
6,032,338	-		PP_5283	0.75	-2.6
6,032,338	-		PP_5283	0.75	+0.7
6,032,338	-		PP_5283	0.75	-1.4
6,032,338	-		PP_5283	0.75	+0.1
6,032,377	-		PP_5283	0.77	-0.4
6,032,377	-		PP_5283	0.77	+0.5
6,032,570	+		PP_5283	0.89	+0.4
6,032,571	-		PP_5283	0.90	+1.5
6,032,584	+				-0.0
6,032,584	+				+0.8
6,032,585	-				-0.3
6,032,734	+				-0.5
6,032,735	-				+0.2
6,032,735	-				+0.0
6,032,735	-				-0.2
6,032,735	-				+0.9
6,032,735	-				-1.2
6,032,743	-				+0.3
6,032,825	-				-1.1
6,032,851	+				+0.6
6,032,851	+				+1.3
6,032,851	+				-0.7
6,032,852	-				-0.4
6,032,852	-				+0.3
6,032,852	-				+0.4
6,032,852	-				-0.3
6,032,852	-				-1.6
6,032,853	+				+0.8
6,032,853	+				+0.9
6,032,853	+				+0.1
6,032,853	+				-0.9
6,032,853	+				+0.3
6,032,854	-				+0.0
6,032,865	+				-0.6
6,032,865	+				-1.4
6,032,865	+				-0.6
6,032,866	-				+0.2
6,032,866	-				+0.2
6,033,113	-		PP_5284	0.35	-0.7
6,033,113	-		PP_5284	0.35	-0.3
6,033,113	-		PP_5284	0.35	-0.6
6,033,113	-		PP_5284	0.35	-1.4
6,033,113	-		PP_5284	0.35	+0.3
6,033,113	-		PP_5284	0.35	-0.9
6,033,218	+		PP_5284	0.51	-2.9
6,033,218	+		PP_5284	0.51	-2.2
6,033,317	+		PP_5284	0.65	+1.3
6,033,317	+		PP_5284	0.65	-0.4
6,033,317	+		PP_5284	0.65	-0.4
6,033,318	-		PP_5284	0.65	-2.5
6,033,429	+		PP_5284	0.82	-0.8
6,033,429	+		PP_5284	0.82	+0.0
6,033,429	+		PP_5284	0.82	-0.1
6,033,429	+		PP_5284	0.82	+1.2
6,033,430	-		PP_5284	0.82	-0.8
6,033,439	+		PP_5284	0.83	+0.3
6,033,439	+		PP_5284	0.83	-0.9
6,033,440	-		PP_5284	0.83	-1.1
6,033,440	-		PP_5284	0.83	-0.7
6,033,440	-		PP_5284	0.83	+0.3
6,033,440	-		PP_5284	0.83	-1.7
6,033,440	-		PP_5284	0.83	+0.1
6,033,440	-		PP_5284	0.83	-1.3
6,033,474	+		PP_5284	0.88	+0.1
6,033,474	+		PP_5284	0.88	-0.0