Strain Fitness in Pseudomonas putida KT2440 around PP_5184

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
5,911,775	+		PP_5183	0.72	+0.2
5,911,775	+		PP_5183	0.72	+1.8
5,911,841	+		PP_5183	0.77	+0.3
5,911,842	-		PP_5183	0.77	+0.5
5,911,842	-		PP_5183	0.77	+0.8
5,911,842	-		PP_5183	0.77	+0.5
5,911,952	+		PP_5183	0.85	+0.1
5,911,955	+		PP_5183	0.85	+1.1
5,911,955	+		PP_5183	0.85	-0.3
5,911,955	+				+0.6
5,911,956	-		PP_5183	0.85	-0.1
5,911,973	+		PP_5183	0.86	+0.1
5,912,151	+				+0.9
5,912,157	+				+0.3
5,912,157	+				+0.5
5,912,157	+				+0.8
5,912,157	+				+0.3
5,912,157	+				+0.7
5,912,158	-				-1.7
5,912,158	-				-1.0
5,912,158	-				+0.8
5,912,158	-				+0.1
5,912,161	+				+0.8
5,912,161	+				+0.6
5,912,161	+				-0.0
5,912,161	+				+1.4
5,912,162	-				-1.1
5,912,162	-				+2.2
5,912,162	-				-1.0
5,912,173	+				+1.3
5,912,173	+				+0.1
5,912,173	+				+0.3
5,912,174	-				-2.0
5,912,174	-				+0.3
5,912,174	-				-0.1
5,912,174	-				+0.2
5,912,174	-				-0.2
5,912,174	-				+0.7
5,912,214	-				-0.5
5,912,214	-				+0.8
5,912,247	+				-0.8
5,912,270	+				-0.8
5,912,270	+				+0.6
5,912,351	+				+0.8
5,912,351	+				+0.0
5,912,352	-				+0.3
5,912,404	+				-0.3
5,912,466	+				+0.2
5,912,467	-				-0.6
5,912,467	-				-0.8
5,912,467	-				+0.1
5,912,469	+				-0.9
5,912,558	-				+0.6
5,912,566	-				+0.8
5,912,576	+				-1.4
5,912,617	+				-1.5
5,912,618	-				+0.6
5,912,618	-				+1.1
5,912,618	-				-0.7
5,912,618	-				+0.2
5,912,661	+				-0.4
5,912,661	+				+0.5
5,912,661	+				+0.2
5,912,661	+				-1.5
5,912,661	+				-0.1
5,912,662	-				-0.9
5,912,662	-				-0.1
5,912,662	-				+0.2
5,912,662	-				+1.4
5,912,712	-				+1.8
5,912,804	+				+1.1
5,912,804	+				+0.9
5,912,827	+				-0.4
5,912,827	+				+0.7
5,912,828	-				-2.0
5,912,828	-				+0.7
5,912,828	-				+1.2
5,912,856	+				+0.2
5,912,857	-				+1.1
5,912,857	-				-0.2
5,912,857	-				+0.8
5,913,017	-		PP_5184	0.21	+0.9
5,913,017	-		PP_5184	0.21	-1.2
5,913,151	+		PP_5184	0.30	+0.3
5,913,152	-		PP_5184	0.31	+1.0
5,913,266	+		PP_5184	0.39	+1.7
5,913,266	+		PP_5184	0.39	-1.0
5,913,266	+				+3.2
5,913,290	+		PP_5184	0.41	+0.7
5,913,429	-		PP_5184	0.51	+0.7
5,913,436	-		PP_5184	0.51	+0.6
5,913,707	+		PP_5184	0.71	+0.7
5,913,708	-		PP_5184	0.71	+0.0
5,913,708	-		PP_5184	0.71	+0.8
5,913,914	+		PP_5184	0.86	+1.3
5,913,995	+				+1.2
5,914,010	+				-0.9
5,914,010	+				+0.6
5,914,099	+				-1.6
5,914,100	-				+1.0
5,914,100	-				+0.6
5,914,100	-				-0.1
5,914,191	+				+0.2
5,914,218	+				+0.3
5,914,218	+				-1.1
5,914,219	-				+0.8
5,914,263	-				+0.5
5,914,299	-				+0.8
5,914,305	-				-0.0
5,914,404	+		PP_5185	0.11	+1.3
5,914,405	-		PP_5185	0.11	+0.2
5,914,476	-		PP_5185	0.17	+2.6
5,914,781	+		PP_5185	0.40	+1.8
5,914,791	+		PP_5185	0.41	+2.3
5,914,865	-		PP_5185	0.46	-0.4
5,914,918	-		PP_5185	0.51	+1.2
5,914,995	+		PP_5185	0.57	+1.1