Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5056 and PP_5057 are separated by 140 nucleotides PP_5057 and PP_5058 are separated by 78 nucleotides
PP_5056: PP_5056 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 5,760,949 to 5,762,484
_5056
PP_5057: PP_5057 - Peptidase, M23/M37 family, at 5,762,625 to 5,763,941
_5057
PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336
_5058
Position (kb)
5762
5763
5764 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5762.588 kb on + strand at 5762.588 kb on + strand at 5762.588 kb on + strand at 5762.588 kb on + strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.589 kb on - strand at 5762.591 kb on + strand at 5762.591 kb on + strand at 5762.591 kb on + strand at 5762.592 kb on - strand at 5762.592 kb on - strand at 5762.647 kb on + strand at 5762.648 kb on - strand at 5762.648 kb on - strand at 5762.857 kb on + strand, within PP_5057 at 5762.857 kb on + strand, within PP_5057 at 5762.858 kb on - strand, within PP_5057 at 5762.988 kb on + strand, within PP_5057 at 5762.988 kb on + strand, within PP_5057 at 5762.989 kb on - strand, within PP_5057 at 5762.989 kb on - strand, within PP_5057 at 5763.045 kb on + strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.046 kb on - strand, within PP_5057 at 5763.048 kb on + strand, within PP_5057 at 5763.048 kb on + strand, within PP_5057 at 5763.048 kb on + strand, within PP_5057 at 5763.048 kb on + strand, within PP_5057 at 5763.049 kb on - strand, within PP_5057 at 5763.054 kb on + strand, within PP_5057 at 5763.054 kb on + strand, within PP_5057 at 5763.226 kb on + strand, within PP_5057 at 5763.535 kb on - strand, within PP_5057 at 5763.651 kb on - strand, within PP_5057 at 5763.765 kb on + strand, within PP_5057 at 5763.882 kb on + strand at 5763.883 kb on - strand at 5764.210 kb on - strand, within PP_5058 at 5764.210 kb on - strand, within PP_5058 at 5764.223 kb on - strand, within PP_5058 at 5764.265 kb on + strand, within PP_5058 at 5764.265 kb on + strand, within PP_5058 at 5764.266 kb on - strand, within PP_5058 at 5764.291 kb on - strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.391 kb on - strand, within PP_5058 at 5764.625 kb on - strand, within PP_5058 at 5764.638 kb on + strand, within PP_5058 at 5764.644 kb on + strand, within PP_5058 at 5764.645 kb on - strand, within PP_5058 at 5764.912 kb on + strand, within PP_5058
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 5,762,588 + +0.1 5,762,588 + +0.2 5,762,588 + +0.3 5,762,588 + +0.8 5,762,589 - -0.4 5,762,589 - -0.5 5,762,589 - +0.6 5,762,589 - +0.5 5,762,589 - -0.6 5,762,589 - -2.1 5,762,589 - -1.5 5,762,589 - -0.1 5,762,591 + +0.2 5,762,591 + -1.5 5,762,591 + -0.2 5,762,592 - -1.2 5,762,592 - -1.9 5,762,647 + -1.0 5,762,648 - +0.5 5,762,648 - -0.3 5,762,857 + PP_5057 0.18 -0.9 5,762,857 + PP_5057 0.18 -2.1 5,762,858 - PP_5057 0.18 -2.5 5,762,988 + PP_5057 0.28 -1.5 5,762,988 + PP_5057 0.28 -3.2 5,762,989 - PP_5057 0.28 -0.3 5,762,989 - PP_5057 0.28 -0.5 5,763,045 + PP_5057 0.32 -2.4 5,763,046 - PP_5057 0.32 +0.4 5,763,046 - PP_5057 0.32 +0.4 5,763,046 - PP_5057 0.32 -0.1 5,763,046 - PP_5057 0.32 -0.8 5,763,046 - PP_5057 0.32 -0.8 5,763,046 - PP_5057 0.32 -0.5 5,763,048 + PP_5057 0.32 -1.9 5,763,048 + PP_5057 0.32 -3.0 5,763,048 + PP_5057 0.32 -2.9 5,763,048 + PP_5057 0.32 -0.6 5,763,049 - PP_5057 0.32 +0.8 5,763,054 + PP_5057 0.33 -1.6 5,763,054 + PP_5057 0.33 -1.8 5,763,226 + PP_5057 0.46 -2.3 5,763,535 - PP_5057 0.69 +0.7 5,763,651 - PP_5057 0.78 -2.6 5,763,765 + PP_5057 0.87 -2.5 5,763,882 + -3.0 5,763,883 - +1.5 5,764,210 - PP_5058 0.14 +1.0 5,764,210 - PP_5058 0.14 +0.4 5,764,223 - PP_5058 0.15 +1.3 5,764,265 + PP_5058 0.19 +0.7 5,764,265 + PP_5058 0.19 +0.7 5,764,266 - PP_5058 0.19 +1.5 5,764,291 - PP_5058 0.21 -0.7 5,764,363 + PP_5058 0.26 +0.5 5,764,363 + PP_5058 0.26 +0.6 5,764,363 + PP_5058 0.26 +1.8 5,764,391 - PP_5058 0.28 +2.1 5,764,625 - PP_5058 0.46 +2.8 5,764,638 + PP_5058 0.47 +0.4 5,764,644 + PP_5058 0.47 +0.1 5,764,645 - PP_5058 0.47 +1.7 5,764,912 + PP_5058 0.68 +0.5
Or see this region's nucleotide sequence