Strain Fitness in Pseudomonas putida KT2440 around PP_4936

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
5,617,586	+				-1.7
5,617,810	+		PP_4936	0.28	-2.1
5,617,810	+		PP_4936	0.28	-0.4
5,617,918	+		PP_4936	0.38	-0.1
5,617,919	-		PP_4936	0.38	+1.3
5,617,919	-		PP_4936	0.38	-1.8
5,618,015	+		PP_4936	0.46	-0.5
5,618,016	-		PP_4936	0.46	+1.0
5,618,129	-		PP_4936	0.56	+0.8
5,618,161	+		PP_4936	0.58	-0.7
5,618,161	+		PP_4936	0.58	-1.8
5,618,161	+		PP_4936	0.58	-0.3
5,618,161	+		PP_4936	0.58	-2.6
5,618,161	+		PP_4936	0.58	+0.2
5,618,162	-		PP_4936	0.58	-0.3
5,618,162	-		PP_4936	0.58	-1.0
5,618,162	-		PP_4936	0.58	-1.6
5,618,162	-		PP_4936	0.58	-0.5
5,618,162	-		PP_4936	0.58	-0.7
5,618,162	-		PP_4936	0.58	+0.1
5,618,184	+		PP_4936	0.60	-0.8
5,618,295	+		PP_4936	0.70	-1.7
5,618,295	+		PP_4936	0.70	-2.6
5,618,296	-		PP_4936	0.70	-1.3
5,618,363	-		PP_4936	0.75	-1.7
5,618,363	-		PP_4936	0.75	-0.5
5,618,363	-		PP_4936	0.75	-1.6
5,618,514	+		PP_4936	0.88	-1.7
5,618,515	-		PP_4936	0.88	-2.1
5,618,616	+				-1.4
5,618,617	-				-0.2
5,618,644	+				-0.2
5,618,645	-				-3.0
5,618,690	+				+0.9
5,618,690	+				+1.5
5,618,690	+				+0.2
5,618,691	-				-0.8
5,618,691	-				-0.1
5,618,698	+				+0.4
5,618,710	+				+1.6
5,618,711	-				-0.5
5,618,711	-				+0.9
5,618,747	+				+0.5
5,618,748	-				+0.5
5,618,748	-				-0.8
5,618,843	-		PP_4937	0.15	-0.8
5,618,909	+		PP_4937	0.26	-2.7
5,618,910	-		PP_4937	0.26	-0.8
5,618,917	+		PP_4937	0.27	-1.8
5,619,028	+		PP_4937	0.46	-1.5
5,619,028	+		PP_4937	0.46	-0.3
5,619,029	-		PP_4937	0.46	+1.5
5,619,094	+		PP_4937	0.56	-2.7
5,619,095	-		PP_4937	0.57	+1.5
5,619,095	-		PP_4937	0.57	+0.2
5,619,286	+		PP_4937	0.88	+1.2
5,619,287	-		PP_4937	0.88	-1.5
5,619,287	-		PP_4937	0.88	-3.3
5,619,287	-		PP_4937	0.88	-1.3
5,619,469	-				-0.7
5,619,469	-				-1.6
5,619,519	-		PP_4938	0.14	+0.8
5,619,577	+		PP_4938	0.19	-1.2
5,619,634	+				+0.9
5,619,635	-		PP_4938	0.24	-0.6
5,619,640	+		PP_4938	0.24	-0.3
5,619,641	-		PP_4938	0.25	-1.4