Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4915 and PP_4916 are separated by 35 nucleotides PP_4916 and PP_4917 are separated by 131 nucleotides
PP_4915: PP_4915 - DNA topoisomerase IV subunit B, at 5,587,243 to 5,589,147
_4915
PP_4916: PP_4916 - putative esterase, at 5,589,183 to 5,589,791
_4916
PP_4917: PP_4917 - 3',5'-cyclic-nucleotide phosphodiesterase, at 5,589,923 to 5,590,723
_4917
Position (kb) 5589
5590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5589.212 kb on - strand at 5589.322 kb on + strand, within PP_4916 at 5589.323 kb on - strand, within PP_4916 at 5589.466 kb on + strand, within PP_4916 at 5589.466 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.575 kb on - strand, within PP_4916 at 5589.575 kb on - strand, within PP_4916 at 5589.770 kb on + strand at 5589.771 kb on - strand at 5589.771 kb on - strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.773 kb on - strand at 5589.825 kb on - strand at 5589.927 kb on + strand at 5590.151 kb on + strand, within PP_4917 at 5590.152 kb on - strand, within PP_4917 at 5590.152 kb on - strand, within PP_4917 at 5590.163 kb on + strand, within PP_4917 at 5590.164 kb on - strand, within PP_4917 at 5590.164 kb on - strand, within PP_4917 at 5590.186 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.756 kb on + strand at 5590.756 kb on + strand at 5590.757 kb on - strand at 5590.757 kb on - strand at 5590.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 5,589,212 - +0.8 5,589,322 + PP_4916 0.23 -1.1 5,589,323 - PP_4916 0.23 -1.6 5,589,466 + PP_4916 0.46 -0.4 5,589,466 + PP_4916 0.46 -0.4 5,589,574 + PP_4916 0.64 +0.1 5,589,574 + PP_4916 0.64 -0.4 5,589,574 + PP_4916 0.64 -0.4 5,589,574 + PP_4916 0.64 -0.9 5,589,574 + PP_4916 0.64 +0.6 5,589,574 + PP_4916 0.64 -0.3 5,589,575 - PP_4916 0.64 -0.5 5,589,575 - PP_4916 0.64 -1.0 5,589,770 + -1.9 5,589,771 - -0.3 5,589,771 - -1.3 5,589,772 + -2.6 5,589,772 + +0.1 5,589,772 + -2.1 5,589,772 + +1.4 5,589,772 + -0.5 5,589,773 - -3.0 5,589,825 - +0.2 5,589,927 + -0.0 5,590,151 + PP_4917 0.28 +0.2 5,590,152 - PP_4917 0.29 -0.2 5,590,152 - PP_4917 0.29 +1.1 5,590,163 + PP_4917 0.30 -2.0 5,590,164 - PP_4917 0.30 +0.2 5,590,164 - PP_4917 0.30 -1.3 5,590,186 + PP_4917 0.33 -0.3 5,590,518 + PP_4917 0.74 -0.5 5,590,518 + PP_4917 0.74 +2.7 5,590,518 + PP_4917 0.74 -0.1 5,590,519 - PP_4917 0.74 -1.2 5,590,519 - PP_4917 0.74 -1.3 5,590,519 - PP_4917 0.74 +0.5 5,590,519 - PP_4917 0.74 -0.4 5,590,519 - PP_4917 0.74 -0.4 5,590,519 - PP_4917 0.74 +1.5 5,590,756 + +0.1 5,590,756 + +0.1 5,590,757 - +1.2 5,590,757 - -0.1 5,590,757 - +0.4
Or see this region's nucleotide sequence