Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5717 and PP_4885 overlap by 4 nucleotides PP_4885 and PP_4886 are separated by 9 nucleotides PP_4886 and PP_4887 are separated by 170 nucleotides PP_4887 and PP_4888 are separated by 170 nucleotides
PP_5717: PP_5717 - conserved protein of unknown function, at 5,552,998 to 5,553,372
_5717
PP_4885: PP_4885 - conserved protein of unknown function, at 5,553,369 to 5,554,340
_4885
PP_4886: PP_4886 - conserved protein of unknown function, at 5,554,350 to 5,554,895
_4886
PP_4887: PP_4887 - conserved protein of unknown function, at 5,555,066 to 5,555,524
_4887
PP_4888: PP_4888 - putative methyl-accepting chemotaxis transducer, at 5,555,695 to 5,557,629
_4888
Position (kb) 5554
5555 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5553.441 kb on - strand at 5553.501 kb on - strand, within PP_4885 at 5553.504 kb on + strand, within PP_4885 at 5553.519 kb on + strand, within PP_4885 at 5553.520 kb on - strand, within PP_4885 at 5553.520 kb on - strand, within PP_4885 at 5553.531 kb on + strand, within PP_4885 at 5553.562 kb on - strand, within PP_4885 at 5553.598 kb on + strand, within PP_4885 at 5553.687 kb on + strand, within PP_4885 at 5553.688 kb on - strand, within PP_4885 at 5553.691 kb on + strand, within PP_4885 at 5553.691 kb on + strand, within PP_4885 at 5553.692 kb on - strand, within PP_4885 at 5553.789 kb on + strand, within PP_4885 at 5553.789 kb on + strand, within PP_4885 at 5553.792 kb on - strand, within PP_4885 at 5553.842 kb on + strand, within PP_4885 at 5553.843 kb on - strand, within PP_4885 at 5553.843 kb on - strand, within PP_4885 at 5553.930 kb on - strand, within PP_4885 at 5553.937 kb on + strand, within PP_4885 at 5553.958 kb on - strand, within PP_4885 at 5553.980 kb on + strand, within PP_4885 at 5553.996 kb on - strand, within PP_4885 at 5554.011 kb on - strand, within PP_4885 at 5554.011 kb on - strand, within PP_4885 at 5554.011 kb on - strand, within PP_4885 at 5554.044 kb on + strand, within PP_4885 at 5554.044 kb on + strand, within PP_4885 at 5554.045 kb on - strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.119 kb on + strand, within PP_4885 at 5554.120 kb on - strand, within PP_4885 at 5554.120 kb on - strand, within PP_4885 at 5554.120 kb on - strand, within PP_4885 at 5554.121 kb on + strand, within PP_4885 at 5554.126 kb on - strand, within PP_4885 at 5554.126 kb on - strand, within PP_4885 at 5554.133 kb on + strand, within PP_4885 at 5554.160 kb on + strand, within PP_4885 at 5554.160 kb on + strand, within PP_4885 at 5554.210 kb on - strand, within PP_4885 at 5554.343 kb on + strand at 5554.343 kb on + strand at 5554.343 kb on + strand at 5554.344 kb on - strand at 5554.344 kb on - strand at 5554.344 kb on - strand at 5554.344 kb on - strand at 5554.344 kb on - strand at 5554.344 kb on - strand at 5554.346 kb on + strand at 5554.346 kb on + strand at 5554.347 kb on - strand at 5554.357 kb on + strand at 5554.357 kb on + strand at 5554.357 kb on + strand at 5554.357 kb on + strand at 5554.358 kb on - strand at 5554.358 kb on - strand at 5554.358 kb on - strand at 5554.435 kb on + strand, within PP_4886 at 5554.435 kb on + strand, within PP_4886 at 5554.435 kb on + strand, within PP_4886 at 5554.436 kb on - strand at 5554.436 kb on - strand, within PP_4886 at 5554.544 kb on - strand, within PP_4886 at 5554.544 kb on - strand, within PP_4886 at 5554.547 kb on - strand, within PP_4886 at 5554.652 kb on - strand, within PP_4886 at 5554.652 kb on - strand, within PP_4886 at 5554.655 kb on + strand, within PP_4886 at 5554.655 kb on + strand, within PP_4886 at 5554.656 kb on - strand, within PP_4886 at 5554.656 kb on - strand, within PP_4886 at 5554.785 kb on - strand, within PP_4886 at 5554.822 kb on + strand, within PP_4886 at 5554.822 kb on + strand, within PP_4886 at 5554.822 kb on + strand, within PP_4886 at 5554.823 kb on - strand, within PP_4886 at 5554.842 kb on + strand at 5554.842 kb on + strand at 5554.842 kb on + strand at 5554.842 kb on + strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.843 kb on - strand at 5554.952 kb on + strand at 5554.952 kb on + strand at 5554.952 kb on + strand at 5554.952 kb on + strand at 5554.961 kb on - strand at 5554.967 kb on + strand at 5554.967 kb on + strand at 5554.967 kb on + strand at 5554.968 kb on - strand at 5555.006 kb on + strand at 5555.022 kb on + strand at 5555.067 kb on + strand at 5555.067 kb on + strand at 5555.127 kb on + strand, within PP_4887 at 5555.128 kb on - strand, within PP_4887 at 5555.128 kb on - strand, within PP_4887 at 5555.144 kb on - strand, within PP_4887 at 5555.175 kb on - strand, within PP_4887 at 5555.175 kb on - strand, within PP_4887 at 5555.175 kb on - strand, within PP_4887 at 5555.187 kb on + strand, within PP_4887 at 5555.188 kb on - strand, within PP_4887 at 5555.188 kb on - strand, within PP_4887 at 5555.336 kb on - strand, within PP_4887 at 5555.363 kb on - strand, within PP_4887 at 5555.460 kb on - strand, within PP_4887 at 5555.477 kb on + strand, within PP_4887 at 5555.504 kb on + strand at 5555.504 kb on + strand at 5555.504 kb on + strand at 5555.505 kb on - strand at 5555.553 kb on + strand at 5555.553 kb on + strand at 5555.553 kb on + strand at 5555.553 kb on + strand at 5555.553 kb on + strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.604 kb on + strand at 5555.626 kb on + strand at 5555.626 kb on + strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.627 kb on - strand at 5555.648 kb on + strand at 5555.649 kb on - strand at 5555.649 kb on - strand at 5555.649 kb on - strand at 5555.757 kb on + strand at 5555.758 kb on - strand at 5555.758 kb on - strand at 5555.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 5,553,441 - -1.5 5,553,501 - PP_4885 0.14 -1.1 5,553,504 + PP_4885 0.14 +0.3 5,553,519 + PP_4885 0.15 -1.5 5,553,520 - PP_4885 0.16 -1.2 5,553,520 - PP_4885 0.16 -0.0 5,553,531 + PP_4885 0.17 +0.6 5,553,562 - PP_4885 0.20 +0.6 5,553,598 + PP_4885 0.24 -0.0 5,553,687 + PP_4885 0.33 -0.7 5,553,688 - PP_4885 0.33 +0.1 5,553,691 + PP_4885 0.33 +0.7 5,553,691 + PP_4885 0.33 -2.2 5,553,692 - PP_4885 0.33 -0.7 5,553,789 + PP_4885 0.43 +0.0 5,553,789 + PP_4885 0.43 -1.8 5,553,792 - PP_4885 0.44 +0.1 5,553,842 + PP_4885 0.49 -0.0 5,553,843 - PP_4885 0.49 +0.1 5,553,843 - PP_4885 0.49 -0.3 5,553,930 - PP_4885 0.58 -1.2 5,553,937 + PP_4885 0.58 +0.9 5,553,958 - PP_4885 0.61 -1.7 5,553,980 + PP_4885 0.63 +0.1 5,553,996 - PP_4885 0.65 +0.6 5,554,011 - PP_4885 0.66 +0.8 5,554,011 - PP_4885 0.66 -0.9 5,554,011 - PP_4885 0.66 +0.0 5,554,044 + PP_4885 0.69 +0.6 5,554,044 + PP_4885 0.69 +0.5 5,554,045 - PP_4885 0.70 +0.2 5,554,119 + PP_4885 0.77 -0.2 5,554,119 + PP_4885 0.77 -0.8 5,554,119 + PP_4885 0.77 +0.7 5,554,119 + PP_4885 0.77 -1.4 5,554,119 + PP_4885 0.77 +1.4 5,554,119 + PP_4885 0.77 +0.0 5,554,119 + PP_4885 0.77 +0.2 5,554,120 - PP_4885 0.77 +0.1 5,554,120 - PP_4885 0.77 +0.3 5,554,120 - PP_4885 0.77 -0.3 5,554,121 + PP_4885 0.77 +0.4 5,554,126 - PP_4885 0.78 +0.5 5,554,126 - PP_4885 0.78 +0.4 5,554,133 + PP_4885 0.79 -1.0 5,554,160 + PP_4885 0.81 +0.9 5,554,160 + PP_4885 0.81 +1.3 5,554,210 - PP_4885 0.87 -0.5 5,554,343 + -0.4 5,554,343 + -2.5 5,554,343 + +0.3 5,554,344 - -0.1 5,554,344 - +0.0 5,554,344 - +0.1 5,554,344 - -0.6 5,554,344 - +0.7 5,554,344 - +0.1 5,554,346 + -0.8 5,554,346 + -1.2 5,554,347 - -0.9 5,554,357 + +0.6 5,554,357 + +0.1 5,554,357 + +0.3 5,554,357 + +0.7 5,554,358 - +0.5 5,554,358 - +0.3 5,554,358 - -0.1 5,554,435 + PP_4886 0.16 -0.0 5,554,435 + PP_4886 0.16 -0.8 5,554,435 + PP_4886 0.16 -0.1 5,554,436 - +1.5 5,554,436 - PP_4886 0.16 -0.5 5,554,544 - PP_4886 0.36 -0.0 5,554,544 - PP_4886 0.36 -0.2 5,554,547 - PP_4886 0.36 +1.1 5,554,652 - PP_4886 0.55 -2.1 5,554,652 - PP_4886 0.55 +0.5 5,554,655 + PP_4886 0.56 -0.9 5,554,655 + PP_4886 0.56 -0.7 5,554,656 - PP_4886 0.56 +0.7 5,554,656 - PP_4886 0.56 +1.3 5,554,785 - PP_4886 0.80 -1.9 5,554,822 + PP_4886 0.86 -0.5 5,554,822 + PP_4886 0.86 +0.4 5,554,822 + PP_4886 0.86 +1.5 5,554,823 - PP_4886 0.87 -0.2 5,554,842 + -1.0 5,554,842 + +0.2 5,554,842 + +0.6 5,554,842 + +1.0 5,554,843 - +2.0 5,554,843 - -0.5 5,554,843 - +0.3 5,554,843 - -0.1 5,554,843 - +1.1 5,554,843 - -0.9 5,554,843 - +0.2 5,554,952 + +1.0 5,554,952 + -2.2 5,554,952 + -0.1 5,554,952 + +0.8 5,554,961 - -0.5 5,554,967 + +0.0 5,554,967 + +0.7 5,554,967 + -0.2 5,554,968 - -1.4 5,555,006 + +0.1 5,555,022 + +0.3 5,555,067 + -0.6 5,555,067 + +0.9 5,555,127 + PP_4887 0.13 -0.5 5,555,128 - PP_4887 0.14 +0.3 5,555,128 - PP_4887 0.14 +0.1 5,555,144 - PP_4887 0.17 +0.8 5,555,175 - PP_4887 0.24 -0.3 5,555,175 - PP_4887 0.24 +0.6 5,555,175 - PP_4887 0.24 +0.2 5,555,187 + PP_4887 0.26 +0.8 5,555,188 - PP_4887 0.27 +0.6 5,555,188 - PP_4887 0.27 +0.8 5,555,336 - PP_4887 0.59 -0.9 5,555,363 - PP_4887 0.65 +0.6 5,555,460 - PP_4887 0.86 +2.0 5,555,477 + PP_4887 0.90 -0.6 5,555,504 + -0.5 5,555,504 + -0.5 5,555,504 + +0.7 5,555,505 - +0.6 5,555,553 + -0.4 5,555,553 + -0.1 5,555,553 + -0.5 5,555,553 + -0.9 5,555,553 + -1.4 5,555,554 - +0.1 5,555,554 - +0.3 5,555,554 - +0.1 5,555,554 - +0.8 5,555,604 + -0.3 5,555,626 + +0.4 5,555,626 + +0.0 5,555,627 - +0.3 5,555,627 - -1.3 5,555,627 - +0.1 5,555,627 - +1.5 5,555,627 - -2.0 5,555,627 - -0.5 5,555,627 - -1.3 5,555,648 + +0.3 5,555,649 - +0.2 5,555,649 - +0.2 5,555,649 - +0.0 5,555,757 + -1.2 5,555,758 - -0.5 5,555,758 - -0.1 5,555,758 - -1.5
Or see this region's nucleotide sequence