Strain Fitness in Pseudomonas putida KT2440 around PP_4818

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
5,478,648	+		PP_4816	0.37	+0.5
5,478,648	+		PP_4816	0.37	-1.1
5,478,648	+		PP_4816	0.37	-0.6
5,478,648	+		PP_4816	0.37	-3.3
5,478,649	-		PP_4816	0.37	-2.4
5,478,649	-		PP_4816	0.37	+0.6
5,478,649	-		PP_4816	0.37	+1.1
5,478,650	+		PP_4816	0.37	-0.6
5,478,650	+		PP_4816	0.37	+1.8
5,478,650	+		PP_4816	0.37	+0.8
5,478,650	+		PP_4816	0.37	-0.1
5,478,650	+		PP_4816	0.37	+0.2
5,478,650	+		PP_4816	0.37	-0.1
5,478,651	-		PP_4816	0.38	-0.2
5,478,651	-		PP_4816	0.38	+0.4
5,478,651	-		PP_4816	0.38	-0.6
5,478,794	+		PP_4816	0.76	+0.5
5,478,874	+				-0.9
5,478,874	+				-0.2
5,478,874	+				-0.0
5,478,874	+				+0.3
5,478,874	+				+0.8
5,478,874	+				-0.6
5,478,875	-				-0.2
5,478,875	-				+0.1
5,478,875	-				+0.2
5,478,875	-				-0.4
5,478,903	+				-2.3
5,478,903	+				-0.5
5,478,903	+				-0.2
5,478,904	-				+0.6
5,478,904	-				+0.6
5,478,904	-				-0.2
5,478,905	+				-0.0
5,478,905	+				-0.4
5,478,905	+				+1.1
5,478,905	+				+0.3
5,478,906	-				+0.8
5,478,906	-				-0.5
5,478,906	-				-0.2
5,478,906	-				+0.2
5,478,906	-				-0.8
5,478,906	-				-0.8
5,478,906	-				+0.1
5,478,982	+				+1.0
5,478,991	-				-0.0
5,479,028	+				+0.1
5,479,029	-				-0.3
5,479,029	-				+0.6
5,479,035	+				-0.1
5,479,051	+				+2.1
5,479,052	-				+0.6
5,479,282	+		PP_4817	0.58	+0.5
5,479,283	-		PP_4817	0.58	+1.0
5,479,346	+		PP_4817	0.72	-0.6
5,479,346	+		PP_4817	0.72	+0.9
5,479,347	-		PP_4817	0.72	+0.7
5,479,347	-		PP_4817	0.72	+0.3
5,479,347	-		PP_4817	0.72	+0.6
5,479,438	+				+0.0
5,479,438	+				+0.4
5,479,438	+				+0.2
5,479,438	+				+0.5
5,479,438	+				+0.2
5,479,438	+				+0.4
5,479,439	-				-2.0
5,479,439	-				+0.3
5,479,439	-				-1.6
5,479,439	-				+0.1
5,479,439	-				+0.3
5,479,439	-				+0.4
5,479,439	-				-0.4
5,479,439	-				+0.8
5,479,439	-				+1.1
5,479,440	+				-1.0
5,479,440	+				-0.1
5,479,440	+				+0.2
5,479,440	+				+1.2
5,479,441	-				+0.3
5,479,441	-				-1.2
5,479,442	+				+0.4
5,479,443	-				+0.3
5,479,443	-				-0.4
5,479,474	+				-0.7
5,479,474	+				+1.8
5,479,474	+				+0.4
5,479,475	-				+0.9
5,479,475	-				+0.6
5,479,475	-				+1.3
5,479,475	-				-1.3
5,479,475	-				+0.6
5,479,475	-				-0.6
5,479,475	-				-0.8
5,479,574	+				-0.7
5,479,575	-				-1.8
5,479,575	-				+1.0
5,479,607	+		PP_4818	0.13	-0.8
5,479,642	+		PP_4818	0.17	-0.1
5,479,642	+		PP_4818	0.17	+0.9
5,479,643	-		PP_4818	0.17	-0.7
5,479,646	+		PP_4818	0.17	-0.4
5,479,664	+		PP_4818	0.19	-1.4
5,480,142	-		PP_4818	0.67	-0.8
5,480,227	+		PP_4818	0.76	-0.6
5,480,228	-		PP_4818	0.76	-1.4
5,480,396	-				-0.0
5,480,477	+				-0.6
5,480,478	-				+1.0
5,480,478	-				+0.6
5,480,483	-				+0.1
5,480,624	+				+0.3
5,480,625	-				+0.6
5,480,756	+		PP_4819	0.18	-0.1
5,480,968	+		PP_4819	0.34	-1.2
5,480,968	+		PP_4819	0.34	-0.1
5,480,969	-		PP_4819	0.34	-0.9
5,480,969	-		PP_4819	0.34	-0.5
5,480,969	-		PP_4819	0.34	-0.0
5,481,257	+		PP_4819	0.55	+0.2
5,481,363	-		PP_4819	0.63	-0.8
5,481,452	-		PP_4819	0.69	-2.7