Strain Fitness in Pseudomonas putida KT2440 around PP_4776

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
5,436,987	+		PP_4775	0.32	-0.1
5,436,987	+		PP_4775	0.32	+0.7
5,436,988	-		PP_4775	0.32	+0.1
5,436,988	-		PP_4775	0.32	+0.9
5,436,988	-		PP_4775	0.32	+0.9
5,436,988	-		PP_4775	0.32	+0.1
5,436,988	-		PP_4775	0.32	+0.7
5,437,009	-		PP_4775	0.34	+0.5
5,437,014	+		PP_4775	0.35	-1.8
5,437,017	+		PP_4775	0.35	-0.9
5,437,017	+		PP_4775	0.35	+0.3
5,437,017	+		PP_4775	0.35	+0.6
5,437,017	+		PP_4775	0.35	-0.3
5,437,018	-		PP_4775	0.35	-0.3
5,437,018	-		PP_4775	0.35	-0.7
5,437,018	-		PP_4775	0.35	+0.1
5,437,072	-		PP_4775	0.42	-0.0
5,437,083	+		PP_4775	0.43	+0.2
5,437,083	+		PP_4775	0.43	+0.4
5,437,083	+		PP_4775	0.43	+0.2
5,437,101	+		PP_4775	0.45	+0.5
5,437,122	+		PP_4775	0.48	+1.1
5,437,122	+		PP_4775	0.48	-1.1
5,437,122	+		PP_4775	0.48	+1.0
5,437,123	-		PP_4775	0.48	+0.2
5,437,167	+		PP_4775	0.53	+1.2
5,437,167	+		PP_4775	0.53	+0.4
5,437,167	+		PP_4775	0.53	-0.8
5,437,168	-		PP_4775	0.53	+1.5
5,437,168	-		PP_4775	0.53	-0.4
5,437,168	-		PP_4775	0.53	-0.9
5,437,187	+		PP_4775	0.56	+0.7
5,437,188	-		PP_4775	0.56	-1.9
5,437,188	-		PP_4775	0.56	-0.0
5,437,365	+		PP_4775	0.77	+0.9
5,437,365	+		PP_4775	0.77	-0.6
5,437,366	-		PP_4775	0.77	-0.5
5,437,366	-		PP_4775	0.77	+0.6
5,437,368	+		PP_4775	0.77	-1.6
5,437,369	-		PP_4775	0.77	-1.1
5,437,369	-		PP_4775	0.77	+1.4
5,437,369	-		PP_4775	0.77	-0.3
5,437,600	+				+0.7
5,437,600	+				-0.4
5,437,601	-				-0.5
5,437,601	-				-0.2
5,437,601	-				-0.2
5,437,601	-				+0.4
5,437,625	+				-0.3
5,437,737	+				-0.2
5,437,738	-				-0.1
5,437,738	-				+0.0
5,437,834	+				+0.2
5,437,835	-				+0.3
5,438,098	+		PP_4776	0.30	-0.4
5,438,098	+		PP_4776	0.30	+0.3
5,438,099	-		PP_4776	0.30	+1.7
5,438,099	-		PP_4776	0.30	+0.7
5,438,099	-		PP_4776	0.30	-0.3
5,438,099	-		PP_4776	0.30	-0.9
5,438,100	+		PP_4776	0.31	-0.6
5,438,100	+		PP_4776	0.31	+0.3
5,438,100	+		PP_4776	0.31	+0.6
5,438,100	+		PP_4776	0.31	-0.3
5,438,100	+		PP_4776	0.31	+0.4
5,438,101	-		PP_4776	0.31	-0.7
5,438,101	-		PP_4776	0.31	+0.1
5,438,101	-		PP_4776	0.31	+0.3
5,438,101	-		PP_4776	0.31	-0.1
5,438,159	-		PP_4776	0.43	-0.4
5,438,159	-		PP_4776	0.43	+0.3
5,438,168	+		PP_4776	0.45	-0.2
5,438,168	+		PP_4776	0.45	-0.2
5,438,168	+		PP_4776	0.45	-0.4
5,438,168	+		PP_4776	0.45	-0.5
5,438,168	+		PP_4776	0.45	-1.4
5,438,169	-		PP_4776	0.45	-1.5
5,438,169	-		PP_4776	0.45	-0.9
5,438,169	-		PP_4776	0.45	-0.7
5,438,169	-		PP_4776	0.45	-0.0
5,438,169	-		PP_4776	0.45	+0.4
5,438,172	+		PP_4776	0.46	+0.3
5,438,173	-		PP_4776	0.46	-0.9
5,438,173	-		PP_4776	0.46	-0.2
5,438,173	-		PP_4776	0.46	+1.0
5,438,275	+		PP_4776	0.67	+0.4
5,438,328	-		PP_4776	0.78	+0.6
5,438,429	-				+0.6
5,438,429	-				-0.1
5,438,449	+				-0.7
5,438,450	-				+0.8
5,438,450	-				+0.2
5,438,450	-				+0.7
5,438,450	-				-0.2
5,438,451	+				+0.5
5,438,452	-				-0.1
5,438,683	+				-0.8
5,438,683	+				+0.9
5,438,683	+				+0.6
5,438,683	+				+0.9
5,438,683	+				-0.3
5,438,683	+				-0.1
5,438,684	-				+0.5
5,438,684	-				-0.9
5,438,684	-				+0.9
5,438,684	-				-0.1
5,438,685	+				-1.6
5,438,686	-				-0.4
5,438,686	-				+0.1
5,438,686	-				+0.8
5,438,724	+				+0.7
5,438,725	-				-0.8
5,438,855	-		PP_4778	0.21	+0.4
5,439,054	+		PP_4778	0.52	-0.8
5,439,054	+		PP_4778	0.52	+0.5
5,439,054	+		PP_4778	0.52	+1.0
5,439,055	-		PP_4778	0.52	-1.4
5,439,055	-		PP_4778	0.52	-0.2
5,439,164	+		PP_4778	0.70	-0.8
5,439,164	+		PP_4778	0.70	+0.3
5,439,165	-		PP_4778	0.70	+1.2
5,439,338	-				-0.2